CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_SCHPO (Adenosylhomocysteinase OS=Schizosaccharomyces pombe GN=SPBC8D2.18c PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = -1
Query:    2 ITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 220
            + IKPQ DR+   +    II+LA+GRL+NLGCATGHPSFVMSCSFTNQV+AQ+ LW + ++  Y   V++LPK
Sbjct:  320 VNIKPQVDRYEL-KNGRHIILLADGRLVNLGCATGHPSFVMSCSFTNQVLAQIALWTDNTS--YPLGVHMLPK 389          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CORGL (Adenosylhomocysteinase OS=Corynebacterium glutamicum GN=ahcY PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L     V R TIKPQ D + F  T   IIVL+EGRL+NLG ATGHPSFVMS SF +Q IAQ+EL++ +  G+YE +VY LPK
Sbjct:  347 IDMHSLLHRDDVTRTTIKPQVDEFTF-STGRSIIVLSEGRLLNLGNATGHPSFVMSNSFADQTIAQIELFQNE--GQYENEVYRLPK 430          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CORGB (Adenosylhomocysteinase OS=Corynebacterium glutamicum (strain R) GN=ahcY PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L     V R TIKPQ D + F  T   IIVL+EGRL+NLG ATGHPSFVMS SF +Q IAQ+EL++ +  G+YE +VY LPK
Sbjct:  351 IDMHSLLHRDDVTRTTIKPQVDEFTF-STGRSIIVLSEGRLLNLGNATGHPSFVMSNSFADQTIAQIELFQNE--GQYENEVYRLPK 434          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CORDI (Adenosylhomocysteinase OS=Corynebacterium diphtheriae GN=ahcY PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+  L     V R+TIKPQ D +  P   S I+VL+EGRL+NLG ATGHPSFVMS SF +Q IAQ+EL+  ++ G+Y  +VY LPK
Sbjct:  351 IDMASLLHRDDVSRVTIKPQVDEFTLPNGKS-IVVLSEGRLLNLGNATGHPSFVMSTSFADQTIAQIELF--QNDGRYVNEVYRLPK 434          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CAUCR (Adenosylhomocysteinase OS=Caulobacter crescentus GN=ahcY PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.401e-17
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + + GL  +   K   IKPQ     FP+    +IVL+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW  K+  KYE +VY LPK
Sbjct:  339 IQIAGLRNF---KWDEIKPQVHHVEFPDGKK-LIVLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTNKA--KYENQVYTLPK 419          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PIG (Adenosylhomocysteinase OS=Sus scrofa GN=AHCY PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.136e-17
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            V+++ IKPQ DR++  +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW      KY   V+ LPK
Sbjct:  316 VEKVNIKPQVDRYLL-KNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTHPD--KYPVGVHFLPK 388          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_NOVAD (Adenosylhomocysteinase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ahcY PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.136e-17
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKP TD   FP+    II+LA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ + +  +Y+ +VYVLPK
Sbjct:  357 IKPGTDLVEFPDGKQ-IIILAKGRLVNLGCATGHPSFVMSSSFTNQVLAQIELFTKNA--EYKNEVYVLPK 424          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_GRABC (Adenosylhomocysteinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.136e-17
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            +KPQ D  VFP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+ELW+ K        VY LPK
Sbjct:  327 VKPQVDEVVFPD-GKRLIILSEGRLVNLGNATGHPSFVMSASFTNQVLAQIELWQAKPGQYLPNHVYTLPK 396          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BOVIN (Adenosylhomocysteinase OS=Bos taurus GN=AHCY PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.136e-17
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            V+++ IKPQ DR++  +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW      KY   V+ LPK
Sbjct:  316 VEKVNIKPQVDRYLL-KNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTHPD--KYPVGVHFLPK 388          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_STRCO (Adenosylhomocysteinase OS=Streptomyces coelicolor GN=ahcY PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+ GL   PG+ +  +KPQ   W +P+    +IVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +    +Y   VYVLPK
Sbjct:  358 IDMAGLAQTPGIVKDEVKPQVHTWTYPD-GKVLIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTKPD--EYPTDVYVLPK 441          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_SCHPO2.401e-1758.90Adenosylhomocysteinase OS=Schizosaccharomyces pomb... [more]
SAHH_CORGL2.401e-1756.32Adenosylhomocysteinase OS=Corynebacterium glutamic... [more]
SAHH_CORGB2.401e-1756.32Adenosylhomocysteinase OS=Corynebacterium glutamic... [more]
SAHH_CORDI2.401e-1754.02Adenosylhomocysteinase OS=Corynebacterium diphther... [more]
SAHH_CAUCR2.401e-1755.17Adenosylhomocysteinase OS=Caulobacter crescentus G... [more]
SAHH_PIG3.136e-1759.21Adenosylhomocysteinase OS=Sus scrofa GN=AHCY PE=3 ... [more]
SAHH_NOVAD3.136e-1763.38Adenosylhomocysteinase OS=Novosphingobium aromatic... [more]
SAHH_GRABC3.136e-1760.56Adenosylhomocysteinase OS=Granulibacter bethesdens... [more]
SAHH_BOVIN3.136e-1759.21Adenosylhomocysteinase OS=Bos taurus GN=AHCY PE=2 ... [more]
SAHH_STRCO4.095e-1750.57Adenosylhomocysteinase OS=Streptomyces coelicolor ... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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