CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RAT (Adenosylhomocysteinase OS=Rattus norvegicus GN=Ahcy PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            V+++ IKPQ DR++  +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW      KY   V+ LPK
Sbjct:  316 VEKVNIKPQVDRYLL-KNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYPVGVHFLPK 388          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MYXXD (Adenosylhomocysteinase OS=Myxococcus xanthus (strain DK 1622) GN=ahcY PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE-KKVYVLPK 262
            ++V  LE Y   K   IKPQ D  +FP+ N  II+LA+GRL+NLGC TGHPS+VMS SF NQ IAQ+EL+    +  YE  KVYVLPK
Sbjct:  351 IEVASLEKY---KWEEIKPQVDHIIFPD-NKRIILLAKGRLVNLGCGTGHPSYVMSSSFANQTIAQIELYSH--SANYEVGKVYVLPK 432          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_AGRT5 (Adenosylhomocysteinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ahcY PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.349e-17
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   IKPQ D   FP+ N  II+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+ +   G+Y+ +VYVLPK
Sbjct:  350 LKWTNIKPQVDMIEFPKGNR-IILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTK--PGEYKNEVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_GEOSL (Adenosylhomocysteinase OS=Geobacter sulfurreducens GN=ahcY PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.986e-17
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP++   II+LAEGRL+NLGCATGHPS+VMS SF NQ +AQ+EL+   + GKY   VY+LPK
Sbjct:  364 IKPQVDHIIFPDSKR-IILLAEGRLVNLGCATGHPSYVMSSSFANQTLAQIELF--CNPGKYPVGVYMLPK 431          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MOUSE (Adenosylhomocysteinase OS=Mus musculus GN=Ahcy PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.124e-17
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            V+++ IKPQ DR+ + +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW      KY   V+ LPK
Sbjct:  316 VEKVNIKPQVDRY-WLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYPVGVHFLPK 388          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_METPP (Adenosylhomocysteinase OS=Methylibium petroleiphilum (strain PM1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  LE    +K   IKPQ D  VFP+    I +LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+  KS      KVYVLPK
Sbjct:  352 IDVASLEK---LKWDEIKPQVDHVVFPDGKK-ITLLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELF-TKSADYQVGKVYVLPK 433          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_METNO (Adenosylhomocysteinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ahcY PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + V GL     +K   IKPQ D   F + +  II+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+ELW  +  GKY+++VY LPK
Sbjct:  344 IQVAGLRN---LKWTNIKPQVDEIEFADGHR-IILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELWTNQ--GKYDRQVYTLPK 424          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MACFA (Adenosylhomocysteinase OS=Macaca fascicularis GN=AHCY PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            V+++ IKPQ DR+   +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW      KY   V+ LPK
Sbjct:  316 VEKVNIKPQVDRYRL-KNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYPVGVHFLPK 388          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_HUMAN (Adenosylhomocysteinase OS=Homo sapiens GN=AHCY PE=1 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            V+++ IKPQ DR+   +    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW      KY   V+ LPK
Sbjct:  316 VEKVNIKPQVDRYRL-KNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD--KYPVGVHFLPK 388          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DELAS (Adenosylhomocysteinase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE-KKVYVLPK 262
            +DV  +E Y   +   IKPQ D   FP+    II+LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+ +     YE  KVYVLPK
Sbjct:  351 IDVASIEQYQWEE---IKPQVDHITFPDGKK-IILLAKGRLVNLGCATGHPSFVMSASFANQTIAQIELFTKPDA--YEVGKVYVLPK 432          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_RAT4.095e-1759.21Adenosylhomocysteinase OS=Rattus norvegicus GN=Ahc... [more]
SAHH_MYXXD4.095e-1756.82Adenosylhomocysteinase OS=Myxococcus xanthus (stra... [more]
SAHH_AGRT55.349e-1760.53Adenosylhomocysteinase OS=Agrobacterium tumefacien... [more]
SAHH_GEOSL6.986e-1761.97Adenosylhomocysteinase OS=Geobacter sulfurreducens... [more]
SAHH_MOUSE9.124e-1759.21Adenosylhomocysteinase OS=Mus musculus GN=Ahcy PE=... [more]
SAHH_METPP1.192e-1658.62Adenosylhomocysteinase OS=Methylibium petroleiphil... [more]
SAHH_METNO1.192e-1654.02Adenosylhomocysteinase OS=Methylobacterium nodulan... [more]
SAHH_MACFA1.192e-1659.21Adenosylhomocysteinase OS=Macaca fascicularis GN=A... [more]
SAHH_HUMAN1.192e-1659.21Adenosylhomocysteinase OS=Homo sapiens GN=AHCY PE=... [more]
SAHH_DELAS1.192e-1656.82Adenosylhomocysteinase OS=Delftia acidovorans (str... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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