CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_ANOGA (Adenosylhomocysteinase OS=Anopheles gambiae GN=Ahcy13 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            V+++ IKPQ DR+     N  II+LAEGRL+NLGCA GH SFVMS SFTNQV+AQ+ELW  +   +Y   V+VLPK
Sbjct:  316 VEKVNIKPQVDRYRLANGNH-IILLAEGRLVNLGCAMGHSSFVMSNSFTNQVLAQIELWTNRE--QYAIGVHVLPK 388          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_LEPCP (Adenosylhomocysteinase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ahcY PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  LE Y   +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+     G    KVYVLPK
Sbjct:  352 IDVASLEGYEWDE---IKPQVDHIIFPDGKK-IILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELFCHPD-GYDVGKVYVLPK 433          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_STRGG (Adenosylhomocysteinase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ahcY PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.033e-16
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +D+ GL    G+ +  +KPQ   W FP+    +IVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +     Y   VYVLPK
Sbjct:  358 IDMAGLAKIDGIVKDEVKPQVHTWTFPD-GKVLIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTKPE--DYPTDVYVLPK 441          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_AZOSE (Adenosylhomocysteinase OS=Azoarcus sp. (strain EbN1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.655e-16
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  +E Y   +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+EL+    T  Y   VY LPK
Sbjct:  346 IDVASIEGYEWEE---IKPQVDHVIFPD-GKRIILLAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELFTR--TADYPVGVYTLPK 426          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_MARMM (Adenosylhomocysteinase OS=Maricaulis maris (strain MCS10) GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = -1
Query:    2 LETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 247
            +E+    +   +KPQ D   FPE +  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW +     Y  +VY+LPK
Sbjct:  347 VESLKNYQWTNVKPQVDLVNFPEGHR-IILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTKGE--NYTNEVYILPK 425          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BORPE (Adenosylhomocysteinase OS=Bordetella pertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV GLE     +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+  ++      +VYVLPK
Sbjct:  347 IDVAGLENCQWEE---IKPQVDHVIFPD-GKRIILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELF-TRNEAYTTGQVYVLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BORPA (Adenosylhomocysteinase OS=Bordetella parapertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV GLE     +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+  ++      +VYVLPK
Sbjct:  347 IDVAGLENCQWEE---IKPQVDHVIFPD-GKRIILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELF-TRNEAYTTGQVYVLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BORBR (Adenosylhomocysteinase OS=Bordetella bronchiseptica GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV GLE     +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+  ++      +VYVLPK
Sbjct:  347 IDVAGLENCQWEE---IKPQVDHVIFPD-GKRIILLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELF-TRNEAYTTGQVYVLPK 428          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_VARPS (Adenosylhomocysteinase OS=Variovorax paradoxus (strain S110) GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  +E Y   +   IKPQ D   FP+    II+LA+GRL+NLGC TGHPSFVMS SF NQ IAQ+EL+  K       KVYVLPK
Sbjct:  354 IDVASIEKYEWEE---IKPQVDHITFPDGKK-IILLAKGRLVNLGCGTGHPSFVMSSSFANQTIAQIELF-TKPDAYQAGKVYVLPK 435          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            +KPQ D   FP+    II+L++GRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW      +Y+  VYVLPK
Sbjct:  361 VKPQVDLVEFPDGKQ-IIILSKGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTRSE--QYQNDVYVLPK 428          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_ANOGA1.192e-1659.21Adenosylhomocysteinase OS=Anopheles gambiae GN=Ahc... [more]
SAHH_LEPCP1.556e-1657.47Adenosylhomocysteinase OS=Leptothrix cholodnii (st... [more]
SAHH_STRGG2.033e-1650.57Adenosylhomocysteinase OS=Streptomyces griseus sub... [more]
SAHH_AZOSE2.655e-1654.02Adenosylhomocysteinase OS=Azoarcus sp. (strain EbN... [more]
SAHH_MARMM3.467e-1653.66Adenosylhomocysteinase OS=Maricaulis maris (strain... [more]
SAHH_BORPE3.467e-1655.17Adenosylhomocysteinase OS=Bordetella pertussis GN=... [more]
SAHH_BORPA3.467e-1655.17Adenosylhomocysteinase OS=Bordetella parapertussis... [more]
SAHH_BORBR3.467e-1655.17Adenosylhomocysteinase OS=Bordetella bronchiseptic... [more]
SAHH_VARPS4.528e-1655.17Adenosylhomocysteinase OS=Variovorax paradoxus (st... [more]
SAHH_SPHAL4.528e-1659.15Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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