CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHILO (Adenosylhomocysteinase OS=Rhizobium loti GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+EL+ +    +Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDMITFPD-GKRMILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELFTKGE--QYQNQVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_ACIAC (Adenosylhomocysteinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            +DV  +E Y   +   +KPQ D  +FP+    I +LA+GRL+NLGCATGHPSFVMS SF NQ IAQ+EL+  K       KVYVLPK
Sbjct:  350 IDVASIEKYRWEE---VKPQVDHVIFPD-GKRITLLAKGRLVNLGCATGHPSFVMSSSFANQTIAQIELF-TKPDAYQAGKVYVLPK 431          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHIME (Adenosylhomocysteinase OS=Rhizobium meliloti GN=ahcY PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.914e-16
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+ N  II+L+EGRL+NLG ATGHPSFVMS SF+NQV+AQ+EL+ +    +Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDLIEFPKGNR-IILLSEGRLLNLGNATGHPSFVMSASFSNQVLAQIELFTKGE--QYKNEVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BARHE (Adenosylhomocysteinase OS=Bartonella henselae GN=ahcY PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.914e-16
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = -1
Query:    2 LDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 262
            + V  L+  P      IKPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+EL+    +G Y+ +V VLPK
Sbjct:  341 IQVAALQNLPWTN---IKPQVDMITFPD-GKRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELFTR--SGHYKNEVTVLPK 421          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_AGRRK (Adenosylhomocysteinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ahcY PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.914e-16
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   F + N  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+EL+ +   G+Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDLIEFAKGNR-IILLSEGRLLNLGNATGHPSFVMSASFTNQTLAQIELFTK--PGQYQNQVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_YEAST (Adenosylhomocysteinase OS=Saccharomyces cerevisiae GN=SAH1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.724e-16
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = -1
Query:    2 ITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKE------------KSTGKYEKKVYVLPK 220
            I IKPQ DR++   +   +I+LA GRL+NLGCATGH SFVMSCSF+NQV+AQ+ L+K             + TG +E  V+VLPK
Sbjct:  322 INIKPQVDRYLL-SSGRHVILLANGRLVNLGCATGHSSFVMSCSFSNQVLAQIALFKSNDKSFREKHIEFQKTGPFEVGVHVLPK 405          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_SINMW (Adenosylhomocysteinase OS=Sinorhizobium medicae (strain WSM419) GN=ahcY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.724e-16
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+ N  II+L+EGRL+NLG ATGHPSFVMS SF+NQV+AQ+EL+ +     Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDLIEFPKGNR-IILLSEGRLLNLGNATGHPSFVMSASFSNQVLAQIELFTKGE--NYKNEVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHILW (Adenosylhomocysteinase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ahcY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.724e-16
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+ N  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+EL+ +    +Y  +VY+LPK
Sbjct:  350 LKWTNVKPQVDLIEFPKGNR-IILLSEGRLLNLGNATGHPSFVMSASFTNQTLAQIELFTKPD--QYSNQVYILPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHIL3 (Adenosylhomocysteinase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ahcY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.724e-16
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+ N  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+EL+ +    +Y  +VY+LPK
Sbjct:  350 LKWTNVKPQVDLIEFPKGNR-IILLSEGRLLNLGNATGHPSFVMSASFTNQTLAQIELFTKPD--QYSNQVYILPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_OCHA4 (Adenosylhomocysteinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ahcY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.724e-16
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+    T  Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDLIEFPD-GKRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNEVYVLPK 422          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_RHILO4.528e-1656.58Adenosylhomocysteinase OS=Rhizobium loti GN=ahcY P... [more]
SAHH_ACIAC4.528e-1654.02Adenosylhomocysteinase OS=Acidovorax avenae subsp.... [more]
SAHH_RHIME5.914e-1657.89Adenosylhomocysteinase OS=Rhizobium meliloti GN=ah... [more]
SAHH_BARHE5.914e-1654.02Adenosylhomocysteinase OS=Bartonella henselae GN=a... [more]
SAHH_AGRRK5.914e-1657.89Adenosylhomocysteinase OS=Agrobacterium radiobacte... [more]
SAHH_YEAST7.724e-1651.76Adenosylhomocysteinase OS=Saccharomyces cerevisiae... [more]
SAHH_SINMW7.724e-1657.89Adenosylhomocysteinase OS=Sinorhizobium medicae (s... [more]
SAHH_RHILW7.724e-1656.58Adenosylhomocysteinase OS=Rhizobium leguminosarum ... [more]
SAHH_RHIL37.724e-1656.58Adenosylhomocysteinase OS=Rhizobium leguminosarum ... [more]
SAHH_OCHA47.724e-1657.89Adenosylhomocysteinase OS=Ochrobactrum anthropi (s... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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