CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BRUAB (Adenosylhomocysteinase OS=Brucella abortus GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.317e-15
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+    T  Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDLIEFPD-GKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNEVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BRUA2 (Adenosylhomocysteinase OS=Brucella abortus (strain 2308) GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.317e-15
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+    T  Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDLIEFPD-GKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNEVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BRUA1 (Adenosylhomocysteinase OS=Brucella abortus (strain S19) GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.317e-15
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = -1
Query:    2 VKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 229
            +K   +KPQ D   FP+    +I+L+EGRL+NLG ATGHPSFVMS SFTNQV+ Q+EL+    T  Y+ +VYVLPK
Sbjct:  350 LKWTNVKPQVDLIEFPD-GKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTR--TDAYKNEVYVLPK 422          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_STRFR (Adenosylhomocysteinase (Fragment) OS=Streptomyces fradiae GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.247e-15
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = -1
Query:    2 PGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 235
            PG+ +  +KPQ   W F +    IIVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +    +Y   VYVLPK
Sbjct:    2 PGIVKDEVKPQVHTWTFADGKK-IIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELYTKPE--QYPTDVYVLPK 76          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHOSH (Adenosylhomocysteinase OS=Rhodobacter sphaeroides GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.247e-15
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = -1
Query:    2 KRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 226
            K   IK Q D    P + S II+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+ELW + +   Y+  VY+LPK
Sbjct:  348 KWTNIKDQVDMIEMP-SGSRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELWTKGA--DYQPGVYILPK 419          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DIAST (Adenosylhomocysteinase OS=Diaphorobacter sp. (strain TPSY) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.247e-15
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    II+LA+GRL+NLGC TGHPSFVMS SF NQ IAQ+EL+     G    KVYVLPK
Sbjct:  364 IKPQVDHVIFPD-GKRIILLAKGRLVNLGCGTGHPSFVMSNSFANQTIAQIELFTHPE-GYDVGKVYVLPK 432          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_ACISJ (Adenosylhomocysteinase OS=Acidovorax sp. (strain JS42) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.247e-15
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D  +FP+    II+LA+GRL+NLGC TGHPSFVMS SF NQ IAQ+EL+     G    KVYVLPK
Sbjct:  364 IKPQVDHVIFPD-GKRIILLAKGRLVNLGCGTGHPSFVMSNSFANQTIAQIELFTHPE-GYDVGKVYVLPK 432          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_RHOCA (Adenosylhomocysteinase OS=Rhodobacter capsulatus GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = -1
Query:    2 KRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 226
            K   IK Q D    P + + II+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+ELW + +  +Y+  VY+LPK
Sbjct:  348 KWTNIKDQVDMIEMP-SGARIILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELWTKGA--EYQPGVYILPK 419          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_HYPNA (Adenosylhomocysteinase OS=Hyphomonas neptunium (strain ATCC 15444) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+EL       +Y+ KVY LPK
Sbjct:  358 IKPQVDMITFPD-GKRIILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIEL--HLRGNEYDNKVYTLPK 425          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_PNECA (Adenosylhomocysteinase (Fragment) OS=Pneumocystis carinii GN=SAHH PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.006e-15
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ DR++     + II+LAEGRL+NLGCATGH S VMS SFTNQV+AQ+ LW  +  G+Y   V+ LPK
Sbjct:  329 IKPQVDRYLLGNGRN-IILLAEGRLVNLGCATGHSSMVMSMSFTNQVLAQIALWTAQE-GQYPLGVHFLPK 397          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_BRUAB1.317e-1556.58Adenosylhomocysteinase OS=Brucella abortus GN=ahcY... [more]
SAHH_BRUA21.317e-1556.58Adenosylhomocysteinase OS=Brucella abortus (strain... [more]
SAHH_BRUA11.317e-1556.58Adenosylhomocysteinase OS=Brucella abortus (strain... [more]
SAHH_STRFR2.247e-1553.85Adenosylhomocysteinase (Fragment) OS=Streptomyces ... [more]
SAHH_RHOSH2.247e-1558.67Adenosylhomocysteinase OS=Rhodobacter sphaeroides ... [more]
SAHH_DIAST2.247e-1561.97Adenosylhomocysteinase OS=Diaphorobacter sp. (stra... [more]
SAHH_ACISJ2.247e-1561.97Adenosylhomocysteinase OS=Acidovorax sp. (strain J... [more]
SAHH_RHOCA2.935e-1557.33Adenosylhomocysteinase OS=Rhodobacter capsulatus G... [more]
SAHH_HYPNA2.935e-1560.56Adenosylhomocysteinase OS=Hyphomonas neptunium (st... [more]
SAHH_PNECA5.006e-1559.15Adenosylhomocysteinase (Fragment) OS=Pneumocystis ... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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