CX288511

Overview
NameCX288511
Unique NameCX288511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1179..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_DICDI (Adenosylhomocysteinase OS=Dictyostelium discoideum GN=sahA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.006e-15
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = -1
Query:    2 KRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 226
            K+ T+KPQ DR+        II+LAEGRL+NLGC TGHPSFVMS SF NQ +AQ+ LW +  T +Y   V+ LPK
Sbjct:  316 KKDTVKPQVDRYTLAN-GVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWTK--TEEYPLGVHFLPK 387          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_CANAL (Adenosylhomocysteinase OS=Candida albicans GN=SAH1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = -1
Query:    2 ITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLEL-------WKEK-----STGKYEKKVYVLPK 220
            + IKPQ DR++  +    +I+LA+GRL+NLGCATGH SFVMSCSF+NQV+AQ+ L       ++EK      TG ++  V++LPK
Sbjct:  323 VNIKPQVDRYLM-KNGRHVILLADGRLVNLGCATGHSSFVMSCSFSNQVLAQIALFNADNKEFREKFPEFAKTGPFDVGVHLLPK 406          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BART1 (Adenosylhomocysteinase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=ahcY PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+EL+       Y  +V VLPK
Sbjct:  354 IKPQVDMITFPD-GKRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELFTRAE--HYTNEVTVLPK 421          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BARQU (Adenosylhomocysteinase OS=Bartonella quintana GN=ahcY PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 214
            IKPQ D   FP+    II+L+EGRL+NLG ATGHPSFVMS SFTNQV+AQ+EL+       Y+ +V VLPK
Sbjct:  354 IKPQVDIVTFPD-GKRIILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELFTRAE--HYKNEVTVLPK 421          
BLAST of CX288511 vs. ExPASy Swiss-Prot
Match: SAHH_BDEBA (Adenosylhomocysteinase OS=Bdellovibrio bacteriovorus GN=ahcY PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.442e-14
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = -1
Query:    2 IKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEK-KVYVLPK 214
            +KPQ D     +    +I+LA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+  +   KY+   VY LPK
Sbjct:  348 VKPQVDIHTL-KNGKQVIILAKGRLVNLGCATGHPSFVMSNSFTNQVLAQMELFNNRD--KYQDIAVYRLPK 416          
The following BLAST results are available for this feature:
BLAST of CX288511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
SAHH_DICDI5.006e-1556.00Adenosylhomocysteinase OS=Dictyostelium discoideum... [more]
SAHH_CANAL1.115e-1449.41Adenosylhomocysteinase OS=Candida albicans GN=SAH1... [more]
SAHH_BART11.115e-1460.56Adenosylhomocysteinase OS=Bartonella tribocorum (s... [more]
SAHH_BARQU1.115e-1460.56Adenosylhomocysteinase OS=Bartonella quintana GN=a... [more]
SAHH_BDEBA9.442e-1456.94Adenosylhomocysteinase OS=Bdellovibrio bacteriovor... [more]

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Properties
Property NameValue
Genbank descriptionC02001C03SK IF1 Citrus clementina cDNA clone C02001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288511 ID=CX288511; Name=CX288511; organism=Citrus clementina; type=EST; length=274bp
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAAGGGGGGGCCCGGT
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