CX288516

Overview
NameCX288516
Unique NameCX288516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:987..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.004e-24
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263
            I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SK GHGRFQT +EK+ + G +K    AK+
Sbjct:  314 INPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.004e-24
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263
            I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SK GHGRFQT +EK+ + G +K    AK+
Sbjct:  314 INPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKE 400          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.618e-24
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263
            I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SK GHGRFQT +EK+ + G +K    AK+
Sbjct:  314 INPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.618e-24
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263
            I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SK GHGRFQT +EK+ + G +K    AK+
Sbjct:  314 INPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.419e-24
Identity = 54/86 (62.79%), Postives = 70/86 (81.40%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAK 260
            I+PMGGFPHYG V++D++M+KG  VG +KRVVTLR+SLL+Q    A EE+ IKF+DTSSKIGHGRFQT+ EK+ +YG  KA + A+
Sbjct:  299 ISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKADIAAE 381          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.832e-24
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA 245
            I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT R ALE+I +KFIDTSSK GHG  QT ++K KY+G  K+
Sbjct:  313 INPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 8.421e-23
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGF HYG +K+D++M+KGC  G +KR+VTLR+SL   TSR ALEE+ +K+IDT+SK G GRFQT  EK  + G +K
Sbjct:  305 ITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 7.129e-22
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGF  YG VK+DY+M+KG   G KKRV+TLR++L  QTSR A E++++K+IDTSSK GHG FQT +EK+ + G +K
Sbjct:  306 ITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.588e-21
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGF HYG V +D++M+KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SK G GRFQT  EK  + G +K
Sbjct:  306 ITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.709e-21
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE + +K+IDT+SK GHGRFQT  E +++ G +K
Sbjct:  305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of CX288516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_MOUSE2.004e-2460.9260S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_BOVIN2.004e-2460.9260S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_MACFA2.618e-2460.9260S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_HUMAN2.618e-2460.9260S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_ENCCU3.419e-2462.7960S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_DICDI5.832e-2460.4960S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_YEAST8.421e-2360.0060S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ASPFU7.129e-2260.0060S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_ASHGO1.588e-2160.0060S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3B_SCHPO2.709e-2157.5060S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC02001C09SK IF1 Citrus clementina cDNA clone C02001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288516 ID=CX288516; Name=CX288516; organism=Citrus clementina; type=EST; length=463bp
ACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAAGATGAT
TATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGTGGTCAC
TCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTTGAGGAAA
TCAAAATCAAGTTCATTGATACCTCTTCCAAGATTGGGCATGGCCGCTTC
CAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGCATAATT
ATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCAGCCAGT
CTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTGGCAT
CAGCTGTGTTTCTTTCCATGTTTCTTTTTCTTTTTCCTTTGGTCTTTTTA
TTTTTTAAGAGATGGTCGTGCTTTATTCTATTGAATATTTTTAAATTTAA
AAAAATTCCTCAG
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