CX288516

Overview
NameCX288516
Unique NameCX288516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:987..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.709e-21
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE + +K+IDT+SK GHGRFQT  E +++ G +K
Sbjct:  305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            I PMGGF HYG+V +D++M+KG   G KKRVVTLR+SL   TSR A+EE+ +K+IDT+SK G GRFQT  EK  + G +K
Sbjct:  305 INPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGF HYG + +D++++KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SK G GRFQT  EK  + G +K
Sbjct:  305 ITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.995e-20
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYA 257
            ITPMGGF  YG + +D++M+KG   G KKRV+TLR+S+   TSR ALE++++K+IDTSS+ GHG FQT  EK+++ G +K  L A
Sbjct:  306 ITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLKKDLAA 390          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.258e-18
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            I PMGGF  YG VK+D++++KG   G KKR+VT+R+SL   TSR A E + +K+IDT+SK G GRFQT  EK  + G +K
Sbjct:  305 INPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of CX288516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3A_SCHPO2.709e-2157.5060S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_CANGA7.882e-2158.7560S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_KLULA1.029e-2057.5060S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_NEUCR2.995e-2054.1260S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_DEBHA1.258e-1853.7560S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]

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Properties
Property NameValue
Genbank descriptionC02001C09SK IF1 Citrus clementina cDNA clone C02001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288516 ID=CX288516; Name=CX288516; organism=Citrus clementina; type=EST; length=463bp
ACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAAGATGAT
TATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGTGGTCAC
TCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTTGAGGAAA
TCAAAATCAAGTTCATTGATACCTCTTCCAAGATTGGGCATGGCCGCTTC
CAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGCATAATT
ATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCAGCCAGT
CTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTGGCAT
CAGCTGTGTTTCTTTCCATGTTTCTTTTTCTTTTTCCTTTGGTCTTTTTA
TTTTTTAAGAGATGGTCGTGCTTTATTCTATTGAATATTTTTAAATTTAA
AAAAATTCCTCAG
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