CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.051e-31
Identity = 74/168 (44.05%), Postives = 106/168 (63.10%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R     +S    + + D+I+ G E    VM+D + +S  AYHE GH I G L P HDP  KVT++PRGQA G+T+F+P  D   IS+Q+L ++I    GGR AEE+I+G   V+TGA  D++  T LA+ MVT +G S+ +GP  L+   + G+V +
Sbjct:  363 NLVNEAALFAARFNNRVVSMIHFEKAKDKIMMGSERRSMVMSDFQKES-TAYHEAGHVIIGRLVPDHDPAHKVTIIPRGQALGITFFLPESDILSISRQKLESQISTLYGGRLAEEIIYGSQNVSTGAFNDIKVATNLARNMVTQWGFSDKLGP--LLYAEEEGEVFL 527          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.985e-31
Identity = 72/168 (42.86%), Postives = 105/168 (62.50%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM 495
            NL+NEAA+ A R  +  +   + + + D+I  G E    VMT+ K K   AYHE GH I G L P HDP  KVT++PRG+A G+T+F+P DD   I+K +L ++I    GGR AEE+I+G   V+TGA  D++  T LA+ MVT +G S ++GP  L+   + G++ +
Sbjct:  363 NLVNEAALFAARNNRDVVMMSDFESAKDKITMGSERRSMVMTE-KQKESTAYHEAGHVIVGRLVPEHDPAHKVTIIPRGRALGVTFFLPKDDVLSINKNKLESQISTLYGGRLAEEIIYGVNNVSTGAHNDIKVATNLARNMVTQWGFSKKLGP--LLYSEEEGEIFL 527          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.985e-31
Identity = 76/153 (49.67%), Postives = 100/153 (65.36%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGP 453
            NL+N AAI A   G   +SS++++ + DRIV G E  T+     SK L AYHE GHAI    T G  P+ K T++PRG A G+   +PS+D T +SK+QL AR+   +GGR AEE+IFG   +TTGA+ DL Q T LA+ MV++ GMSE IGP
Sbjct:  569 NLVNIAAIKAAVEGAEKLSSEQLEFAKDRIVMGTERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATIMPRGSALGMVTQLPSNDETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAIGP 721          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.877e-31
Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMAR 510
            NL+NEAA+ A R  K  ++  E + + D+I  G E    +MTD K K   AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D   IS++QL +++     GR AE++I+G   ++TGA+ D++  T +A+ MVT +G SE +GP  ++     G+V + R MA+
Sbjct:  108 NLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTD-KQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRGRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGP--ILYTEDEGEVFLGRSMAK 278          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.877e-31
Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMAR 510
            NL+NEAA+ A R  K  ++  E + + D+I  G E    +MTD K K   AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D   IS++QL +++     GR AE++I+G   ++TGA+ D++  T +A+ MVT +G SE +GP  ++     G+V + R MA+
Sbjct:  362 NLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTD-KQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRGRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIARNMVTQWGFSEKLGP--ILYTEDEGEVFLGRSMAK 532          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.514e-30
Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIG 450
            N++NEA +LA R  +  I+  +ID++IDR++AG   +  V++D + + LVAYHE GHA+ G     +D VQK+T++PRGQA G T   P S D  L  K  L A I   +GGRAAEE I+G  E+TTGA+ D  + T +A+ MVT  GMS++G
Sbjct:  442 NVINEATLLAVRDNRTTININDIDEAIDRVIAGPAKKSRVISD-EDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMSKLG 593          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.978e-30
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIG 450
            N++NEA +LA R  +  I+  +ID++IDR++AG   +  V++D   K LVAYHE GHA+ G     +D VQK+T++PRGQA G T   P S D  L  K  L A I   +GGRAAEE I+G  E+TTGA+ D  + T +A+ MVT  GMS++G
Sbjct:  439 NVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKKSRVVSDADRK-LVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGPLEITTGASSDFYKATNIARAMVTQLGMSKLG 590          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.674e-29
Identity = 70/153 (45.75%), Postives = 99/153 (64.71%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGP 453
            N+LNEAA++A RR K+ I + +ID++ DR++AG      T   K + LVAYHE GH I G +      V KVT+VPRG+A G    +P +D  L+SK+ +  ++ G +GGR AEE+IF     TTGA+ D +Q T +A+ MVT +GMSE +GP
Sbjct:  398 NVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFN--VQTTGASNDFEQATQMARAMVTEYGMSEKLGP 548          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 1.674e-29
Identity = 70/153 (45.75%), Postives = 99/153 (64.71%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGP 453
            N+LNEAA++A RR K+ I + +ID++ DR++AG      T   K + LVAYHE GH I G +      V KVT+VPRG+A G    +P +D  L+SK+ +  ++ G +GGR AEE+IF     TTGA+ D +Q T +A+ MVT +GMSE +GP
Sbjct:  398 NVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFN--VQTTGASNDFEQATQMARAMVTEYGMSEKLGP 548          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.871e-29
Identity = 68/150 (45.33%), Postives = 98/150 (65.33%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE 444
            NL+N AA+ A   G  A++  +++ + DRI+ G E    V++D +S+ L AYHE GHA+    T G  PV K T+VPRG A G+   +P  D T +S++Q+ AR+   +GGR AEE+IFG  EVT+GA+ D QQ T +A+ MVT +GMS+
Sbjct:  438 NLVNVAALKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSK 586          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH_BUCAP3.051e-3144.05Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCBP3.985e-3142.86Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSHB_ARATH3.985e-3149.67Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH2_HAEIN8.877e-3143.10Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_HAEIN8.877e-3143.10Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH_MYCGE1.514e-3046.41Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_MYCPN1.978e-3047.06Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_STRR61.674e-2945.75Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN1.674e-2945.75Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH5_ORYSJ4.871e-2945.33Cell division protease ftsH homolog 5, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
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