CX288518

Overview
NameCX288518
Unique NameCX288518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1439..1959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.133e-20
Identity = 59/162 (36.42%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQ 477
            N+ NEAA+ A R G  ++ +   + +++R++AG  + + +   + + +VA+HE GHA+ G +    + V KV++ PR   A G    +P D   L +K+QLF R+   LGGRA+E + F   EVT+GA  DL+++T +A  MV  FGM+  IGP S  +  +
Sbjct:  523 NICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQ-HLFTKEQLFERMCMALGGRASEALSFN--EVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQE 681          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   88 IVAGMEGTV----MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQ 477
            +  G  GT     +   + + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F    VT+GA  DL+++T +A  MV  FGM+  IGP S  +  +
Sbjct:  512 LTPGFSGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFS--RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQE 644          
BLAST of CX288518 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 51/164 (31.10%), Postives = 86/164 (52.44%), Query Frame = 1
Query:    1 NLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDG-----------KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIG 450
            NL+NEAAI++ R+G++ I  ++I D +D+ +    G ++T+            + K L+A HE GH +   L P  D      L+P G+   ++ F P +D       +   +  ++V   GGR AE V+F G  VT G   DL++IT +A++MV +   + +G
Sbjct:  708 NLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVF-GDNVTDGGKDDLEKITKIAREMVISPQSARLG 870          
The following BLAST results are available for this feature:
BLAST of CX288518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
SPG7_HUMAN4.133e-2036.42Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
SPG7_RAT5.228e-1538.24Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
FTSHC_ARATH4.893e-1331.10Cell division protease ftsH homolog 12, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionC02001C11SK IF1 Citrus clementina cDNA clone C02001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288518 ID=CX288518; Name=CX288518; organism=Citrus clementina; type=EST; length=521bp
AACCTCTTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTC
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