CX288519
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SMAL1_DANRE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio GN=smarcal1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11 Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 2 Query: 41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 361 G + L+F+ +LD + L +++ R+DGST ERQ + + F +LS A GL L A VV ++ +NP + QAEDR HRIGQT V I+ Sbjct: 628 GREKFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAERQLLCERFQASQQSCVAVLSITAANMGLTLHSAALVVFAELFWNPGVLIQAEDRVHRIGQTSNVDIH 734
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SMAL1_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Rattus norvegicus GN=Smarcal1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11 Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 2 Query: 41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 361 G + L+F+ +LD + L+ V + R+DGST +R+ + F +LS A GL + AD VV ++ +NP + QAEDR HRIGQT V I+ Sbjct: 680 GREKFLVFAHHKVLLDAIAKELERKNVQHIRIDGSTPSADREDLCQQFQLSKGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVGIH 786
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SMAL1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11 Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 2 Query: 41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 361 G + L+F+ +LD + L+ V + R+DGST ER+ + F +LS A GL + AD VV ++ +NP + QAEDR HRIGQT V I+ Sbjct: 724 GREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIH 830
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: RAD5_ASHGO (DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11 Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 2 Query: 50 RVLIFSQWTSMLDILEWTL------DVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIF--ACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364 +V++FSQ++S LDILE L D+ + + DG + ER ++ F + + LLS +AGG GLNLT A I D ++P ++ QA DR HRIGQ+ V IYR Sbjct: 930 QVVVFSQFSSYLDILENELRQSFASDICEIY--KFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGMEDQAMDRIHRIGQSNTVKIYR 1040
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 2 Query: 56 LIFSQWTSMLDILEWTLD-VIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385 LIF+Q+ M ++++ L+ G + L+GS ER +V+ F +LS +AGG GLNLT A+ V+ +D +NP ++ QA DR +RIGQ R V +++ T+ Sbjct: 769 LIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQRK-EYPTLILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQERFVHVHKMITTGTI 878 The following BLAST results are available for this feature:
BLAST of CX288519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288519 ID=CX288519; Name=CX288519; organism=Citrus clementina; type=EST; length=635bpback to top |