CX288519

Overview
NameCX288519
Unique NameCX288519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SMAL1_DANRE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio GN=smarcal1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 361
            G  + L+F+    +LD +   L    +++ R+DGST   ERQ + + F         +LS  A   GL L  A  VV  ++ +NP +  QAEDR HRIGQT  V I+
Sbjct:  628 GREKFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAERQLLCERFQASQQSCVAVLSITAANMGLTLHSAALVVFAELFWNPGVLIQAEDRVHRIGQTSNVDIH 734          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SMAL1_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Rattus norvegicus GN=Smarcal1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 361
            G  + L+F+    +LD +   L+   V + R+DGST   +R+ +   F         +LS  A   GL  + AD VV  ++ +NP +  QAEDR HRIGQT  V I+
Sbjct:  680 GREKFLVFAHHKVLLDAIAKELERKNVQHIRIDGSTPSADREDLCQQFQLSKGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVGIH 786          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SMAL1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIY 361
            G  + L+F+    +LD +   L+   V + R+DGST   ER+ +   F         +LS  A   GL  + AD VV  ++ +NP +  QAEDR HRIGQT  V I+
Sbjct:  724 GREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIH 830          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: RAD5_ASHGO (DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 2
Query:   50 RVLIFSQWTSMLDILEWTL------DVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIF--ACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364
            +V++FSQ++S LDILE  L      D+  +   + DG   + ER  ++  F   + +     LLS +AGG GLNLT A    I D  ++P ++ QA DR HRIGQ+  V IYR
Sbjct:  930 QVVVFSQFSSYLDILENELRQSFASDICEIY--KFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGMEDQAMDRIHRIGQSNTVKIYR 1040          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 2
Query:   56 LIFSQWTSMLDILEWTLD-VIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            LIF+Q+  M ++++  L+   G   + L+GS    ER  +V+ F         +LS +AGG GLNLT A+ V+ +D  +NP ++ QA DR +RIGQ R V +++     T+
Sbjct:  769 LIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQRK-EYPTLILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQERFVHVHKMITTGTI 878          
The following BLAST results are available for this feature:
BLAST of CX288519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
SMAL1_DANRE5.358e-1136.45SWI/SNF-related matrix-associated actin-dependent ... [more]
SMAL1_RAT6.997e-1135.51SWI/SNF-related matrix-associated actin-dependent ... [more]
SMAL1_HUMAN6.997e-1136.45SWI/SNF-related matrix-associated actin-dependent ... [more]
RAD5_ASHGO6.997e-1139.82DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5... [more]
YWQA_BACSU9.139e-1136.04Uncharacterized ATP-dependent helicase ywqA OS=Bac... [more]

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Properties
Property NameValue
Genbank descriptionC02001C12SK IF1 Citrus clementina cDNA clone C02001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288519 ID=CX288519; Name=CX288519; organism=Citrus clementina; type=EST; length=635bp
ATGTCGGGTATTATCTAAACTTCTCCCTTCACTGAAAAAAGGTGGTCATC
GGGTTTTGATTTTTAGCCAATGGACGTCAATGCTTGATATTCTGGAGTGG
ACTTTGGATGTGATTGGTGTTACATATAGACGTCTTGATGGAAGTACCCA
AGTGACAGAGAGGCAGGCTATAGTCGACGCCTTCAATAATGACACTTCTA
TTTTTGCATGCTTGCTTTCAACAAGAGCTGGAGGCCAGGGTTTAAACTTG
ACTGGCGCCGATACTGTCGTCATCCATGACATGGATTTCAATCCGCAAAT
TGACCGTCAAGCTGAAGATCGTTGTCATCGAATTGGCCAAACAAGGCCGG
TAACCATATACAGGTCATTTAAACATCCCACTCTTATTCTTCTCTTGCAT
GTATTTAGTGAACTTTTTAACTGTTGCAAACTTGTATGGTGTATGCTTTT
GCTCTATCTGCTCAAGTCCTCTGCAGGCTAGTAACAAAGGGTACGGTTGA
CGAGAATGTGTATGAGATAGCAAAGCGAAAGCTCATCTTGGATGCTGCAG
TGCTCGAGTCTGGCGTGGAGGTAGATAATGAAGGTGACACATCTGATATG
ACTATGGGAGAGATATTATCATCCATCCTGATGGG
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