CX288519

Overview
NameCX288519
Unique NameCX288519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.061e-24
Identity = 59/108 (54.63%), Postives = 70/108 (64.81%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFAC-LLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364
            GHRVLIFSQ   MLD+L   L      ++RLDGS +   R+  +D FN + S   C LLSTRAGG G+NL  ADTV+I D D+NPQ D QA+ R HRIGQ   V IYR
Sbjct:  852 GHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYR 959          

HSP 2 Score: 30.4166 bits (67), Expect = 1.061e-24
Identity = 16/39 (41.03%), Postives = 25/39 (64.10%), Query Frame = 1
Query:  475 RLVTKGTVDENVYEIAKRKLILDAAVLESGVEVDNEGDT 591
            RLVT  +V+E + E AK+K++LD  V++    +D  G T
Sbjct:  959 RLVTARSVEEQIVERAKQKMVLDHLVIQ---RMDTTGRT 994          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.112e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 2
Query:   47 HRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            HRVLI+ Q T M+D++E  L      + RLDGS+++ +R+ +V  +  +  IF  LLSTRAGG G+NLT ADTV+ +D D+NP ID QA DR HR+GQT+ VT+YR     T+
Sbjct: 1312 HRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLVRGTI 1424          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.393e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNN-DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            G RVLIFSQ++ MLD+LE         Y RLDGST   +R   ++A+N  D+  F  +L+TRAGG G+NL  AD V+I+D D+NPQ D QA DR HRIGQ + V ++R     T+
Sbjct:  451 GSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTV 565          

HSP 2 Score: 32.7278 bits (73), Expect = 1.393e-24
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  475 RLVTKGTVDENVYEIAKRKLILDAAVLESG 564
            RL+T+ TVDE + E A+ KL LD  V++ G
Sbjct:  558 RLITENTVDERIIEKAEAKLRLDNIVIQQG 587          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.452e-24
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNN-DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GHRVLIFSQ   MLDIL   L + G+ ++RLDG+    +R+  +D FN+ D++ F  LLSTRAGG G+NL  ADTVVI D D+NPQ D QA  R HRIGQ   V +YR     T+
Sbjct:  711 GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 825          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.452e-24
Identity = 61/114 (53.51%), Postives = 72/114 (63.16%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GHRVL+FSQ T MLDIL+  LD  G +Y R+DGS +  ER   +  F     IF  LLSTRAGG G+NLT ADTV+  D DFNPQ D QA  R HRIGQ + V + R     T+
Sbjct:  365 GHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTV 477          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe GN=mot1 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.235e-24
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   47 HRVLIFSQWTSMLDILEWTL---DVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364
            HRVLIF Q   MLD++E  L    +  VTY RLDGS + T+RQ  V  FNND SI   LL+T  GG GLNLTGADTV+  + D+NP  D QA DR HRIGQ + V +YR
Sbjct: 1737 HRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYR 1845          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: YFC1_SCHPO (Uncharacterized ATP-dependent helicase C25A8.01c OS=Schizosaccharomyces pombe GN=SPAC25A8.01c PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364
            G RV++FSQ+T +LDIL+  +  + + + R DGSTQV  RQ ++D F  D SI   LLST+AGG G+NL  A+ V+++D+ FNP  D QAEDR HR+GQ + VT+Y+
Sbjct:  777 GDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYK 883          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 61/109 (55.96%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNND-TSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364
            GGHRVLIFSQ T MLD+LE  L+  G  Y R+DG      RQ  +D FN      F  LLSTRAGG G+NL  ADTV+I+D D+NP  D QA  R HRIGQ + V IYR
Sbjct: 1058 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYR 1166          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 61/109 (55.96%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNND-TSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364
            GGHRVLIFSQ T MLD+LE  L+  G  Y R+DG      RQ  +D FN      F  LLSTRAGG G+NL  ADTV+I+D D+NP  D QA  R HRIGQ + V IYR
Sbjct: 1065 GGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYR 1173          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.150e-24
Identity = 60/116 (51.72%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   47 HRVLIFSQWTSMLDILEWTLD---VIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            HR LIF Q   MLD++E  L    +  VTY RLDGS    +RQ +V  FN D SI   LL+T+ GG GLNLTGADTV+  + D+NP  D QA DR HRIGQ + V +YR     TL
Sbjct: 1647 HRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTL 1762          

HSP 2 Score: 24.6386 bits (52), Expect = 5.150e-24
Identity = 9/27 (33.33%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  475 RLVTKGTVDENVYEIAKRKLILDAAVL 555
            R++TKGT++E +  + K K+ + + V+
Sbjct: 1755 RIITKGTLEEKIMGLQKFKMNIASTVV 1781          
The following BLAST results are available for this feature:
BLAST of CX288519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CHD1_DROME1.061e-2454.63Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]
INO80_CANGA1.112e-2449.56Putative DNA helicase INO80 OS=Candida glabrata GN... [more]
ISW1_CAEEL1.393e-2448.70Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
CHD1_YEAST1.452e-2453.04Chromo domain-containing protein 1 OS=Saccharomyce... [more]
CHD1L_BOVIN1.452e-2453.51Chromodomain-helicase-DNA-binding protein 1-like O... [more]
MOT1_SCHPO3.235e-2455.96Probable helicase mot1 OS=Schizosaccharomyces pomb... [more]
YFC1_SCHPO4.226e-2450.47Uncharacterized ATP-dependent helicase C25A8.01c O... [more]
CHD4_MOUSE4.226e-2455.96Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN4.226e-2455.96Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
MOT1_YEAST5.150e-2451.72TATA-binding protein-associated factor MOT1 OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionC02001C12SK IF1 Citrus clementina cDNA clone C02001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288519 ID=CX288519; Name=CX288519; organism=Citrus clementina; type=EST; length=635bp
ATGTCGGGTATTATCTAAACTTCTCCCTTCACTGAAAAAAGGTGGTCATC
GGGTTTTGATTTTTAGCCAATGGACGTCAATGCTTGATATTCTGGAGTGG
ACTTTGGATGTGATTGGTGTTACATATAGACGTCTTGATGGAAGTACCCA
AGTGACAGAGAGGCAGGCTATAGTCGACGCCTTCAATAATGACACTTCTA
TTTTTGCATGCTTGCTTTCAACAAGAGCTGGAGGCCAGGGTTTAAACTTG
ACTGGCGCCGATACTGTCGTCATCCATGACATGGATTTCAATCCGCAAAT
TGACCGTCAAGCTGAAGATCGTTGTCATCGAATTGGCCAAACAAGGCCGG
TAACCATATACAGGTCATTTAAACATCCCACTCTTATTCTTCTCTTGCAT
GTATTTAGTGAACTTTTTAACTGTTGCAAACTTGTATGGTGTATGCTTTT
GCTCTATCTGCTCAAGTCCTCTGCAGGCTAGTAACAAAGGGTACGGTTGA
CGAGAATGTGTATGAGATAGCAAAGCGAAAGCTCATCTTGGATGCTGCAG
TGCTCGAGTCTGGCGTGGAGGTAGATAATGAAGGTGACACATCTGATATG
ACTATGGGAGAGATATTATCATCCATCCTGATGGG
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