CX288521

Overview
NameCX288521
Unique NameCX288521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length603
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 101/201 (50.25%), Postives = 143/201 (71.14%), Query Frame = 2
Query:    8 FYQDFDLTWGDKRAKIFNGG---QLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSS-QGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            FY+ FD+       ++ +     Q ++L+LDR SGSGF SK  YLFG   +Q+KLV G+SAGTVT++YLSS +G  HDEID EF+GN+SG PY+++TN++A G G +E QFYLWFDPT +FHTY +IW PQ++IF VD++P+R FK  + L   +P+++PM+++++LW+   WATR G VK DW+ APF   YR +    C
Sbjct:   28 FYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLA--YPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNAC 226          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.216e-56
Identity = 96/199 (48.24%), Postives = 143/199 (71.86%), Query Frame = 2
Query:    5 SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 601
            +F Q++ +TWG       + G+ + L +D+ SG GF+SK  Y  G  +M++K+ +G++ G VTA+YL+S+G  HDEIDFEFLGN +G+P  L TN+F  G+GNRE++F LWF+PT+++HTY ++W P  ++F VDNIPIRV+KN    GV +P ++PM++ +SLWN DDWAT GG  K +W+ +PF A++R+F    CN
Sbjct:   34 TFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKNEN--GVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCN 229          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.876e-55
Identity = 100/199 (50.25%), Postives = 135/199 (67.84%), Query Frame = 2
Query:   17 DFDL----TWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 601
            DFD+    TWG       N G+ + LS+D  SGSGF+SK  Y  G   M++KL   DSAG VTA+YL+S+G THDE+DFEFLGN  G+P  + TN+F+ G+G REQ+F  WFDPT +FHTY ++W P  ++F VD +PIRVFKN +  GV +P ++PM++ +SLWN ++WAT GG  K +W  APF A Y+ F    C+
Sbjct:   31 DFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCH 228          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.108e-53
Identity = 94/197 (47.72%), Postives = 135/197 (68.53%), Query Frame = 2
Query:    8 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            F  ++ +TWG       N G+ + LSLD  SGSGF+SK  Y  G   +++K+   D++G VTA+YL+S+G THDE+DFEFLGN  G+   + TN+F  GKGNREQ+  LWFDP+++FHTY+++W P  ++  VDNIP+RVFKN  S G+ +P ++PM++  SLWN ++WAT GG  K +W+ APF A ++ F    C
Sbjct:   39 FDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGC 233          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.792e-43
Identity = 86/206 (41.75%), Postives = 125/206 (60.68%), Query Frame = 2
Query:    5 SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPT---HDEIDFEFLGNVSGQPYILHTNIFAQGKGN-----REQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            +FY+ F   WG +  ++      L++ LDR SGSGF+S + +  G     +KL  G +AG +T+ YLS+       HDE+D EFLG   G+PY L TN++ +G G+     RE +F LWFDPT++FH Y+++W P+ +IFLVD+IPIR +    +   P    +PM +Y S+W+A  WAT  G  K D+   PFTA Y NF+A+ C
Sbjct:   42 NFYKGFRNLWGPQHQRMDQNA--LTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGC 242          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.542e-41
Identity = 82/205 (40.00%), Postives = 120/205 (58.54%), Query Frame = 2
Query:    8 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGP---THDEIDFEFLGNVSGQPYILHTNIFAQGKGNR-----EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            F ++F   WG +  +      +++L LD+ +GSGF+S R Y  G     +KL  G +AG  T+ YLS+       HDE+D EFLG   G+PY L TN+F +G G+R     E +F LWFDPT++FH Y+++W P  ++F VD++PIR +        P    +PM +Y S+W+A DWAT  G +K D+   PF A Y+NF+   C
Sbjct:   39 FDREFRTLWGSQHQR--REQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFP---TRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGC 238          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.459e-40
Identity = 81/194 (41.75%), Postives = 118/194 (60.82%), Query Frame = 2
Query:    8 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGN--REQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYY 574
            F + +   +GD+   +   G+ + L+LD  +GSGF S   YL G     +KL A  SAG V A+YLS+       HDEIDFEFLGN+ G+ + + TNI+  G  +  RE+++ LWFDPT +FH YS++W   H+IF VDN+PIR  K   S+G  FP  +PM +YS++W+   WAT GG    ++  AP+ + +
Sbjct:   31 FDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQF 223          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.214e-39
Identity = 78/195 (40.00%), Postives = 117/195 (60.00%), Query Frame = 2
Query:    5 SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGK--GNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYY 574
            SF + +   +GDK   +   G+ + L+LD  +GSGF S   YL G     +KL +  +AG V A+Y+S+       HDEIDFEFLGN+  + + + TNI+  G     RE+++ LWFDPT +FH YS++W   H+IF VDN+PIR  K    +G  FP ++PM +Y+++W+   WAT GG    ++  AP+ A +
Sbjct:   30 SFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARF 223          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 79/204 (38.73%), Postives = 120/204 (58.82%), Query Frame = 2
Query:    5 SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR--EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 601
            SF +     +GD           + L LDR +GSGF S   Y  G     +KL A  +AG V A+Y S+      THDE+D EFLGN+ G+P+   TN++  G  +R  E+++ LWFDP++ FH YS++W P  +IF VD++PIR     +++G  +P  +PM +Y+++W+A DWAT GG  K ++  APF A +++F    C+
Sbjct:   31 SFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCS 233          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.143e-36
Identity = 74/184 (40.22%), Postives = 110/184 (59.78%), Query Frame = 2
Query:   65 GQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGP---THDEIDFEFLGNVSGQPYILHTNIFAQG--KGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN 601
            G L  L+LD+ SG+G  SK  Y +G    +LKL AG ++G V A+YLS+      +HDEID E LG      + + TN++A G  +  RE++FY WFDPT+ FH Y++IW   H +FLVDNIP+R F N  +    +P ++PM +Y ++W+  +WAT+GG    ++  APF     +     C+
Sbjct:   60 GSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCS 242          
The following BLAST results are available for this feature:
BLAST of CX288521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
XTH8_ORYSJ5.274e-5850.25Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH3_ARATH2.216e-5648.24Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH2_ARATH1.876e-5550.25Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH5.108e-5347.72Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH4.792e-4341.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.542e-4140.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH8.459e-4041.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH3.214e-3940.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH2.083e-3838.73Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH1.143e-3640.22Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC02001D02SK IF1 Citrus clementina cDNA clone C02001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288521 ID=CX288521; Name=CX288521; organism=Citrus clementina; type=EST; length=603bp
GGGTAGCTTCTATCAAGACTTTGATTTAACATGGGGTGATAAGAGAGCTA
AGATTTTCAATGGCGGCCAACTTCTTTCTCTGTCTCTAGACAGAGTTTCT
GGCTCTGGTTTTCAGTCCAAGAGAGACTACTTATTTGGCAGAATTGATAT
GCAGCTCAAGCTTGTTGCTGGTGACTCTGCTGGCACTGTCACTGCCTACT
ATCTGTCTTCGCAAGGGCCGACTCATGATGAGATTGATTTTGAGTTCTTG
GGAAATGTGAGCGGTCAGCCTTACATTCTTCACACAAATATATTCGCTCA
GGGTAAAGGCAACCGGGAGCAACAATTCTATCTCTGGTTTGATCCCACAA
GAAACTTCCACACTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTC
TTGGTAGATAACATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGG
AGTTCCCTTCCCTGAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGA
ATGCTGATGACTGGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACT
AAGGCTCCTTTCACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAA
CAA
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