CX288522

Overview
NameCX288522
Unique NameCX288522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.466e-29
Identity = 62/153 (40.52%), Postives = 94/153 (61.44%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512
            PKI+ITT R  SSR   F  E+  + PN+    RG YD+K++++ +K +D T +I+    R  PD +L+  LP GPTA F ++ +V+R DI N G  +   P L+ +N  ++LGHR   +++ LFP  P+   +R++TF N  D+I FRHH Y
Sbjct:   78 PKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFP-VPKPDSKRIITFSNSEDYISFRHHVY 229          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.317e-28
Identity = 66/153 (43.14%), Postives = 89/153 (58.17%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512
            PK+L+TT R  SSR   F  E+  +IPNS+   RG   +  ++E A+  D T I+++H +R  PD L+I  LP GPT  F L  +VLR DI N G  +   P L+  N  ++LG RV   + +LFP  P+    RVVTF N  D+I FRHH Y
Sbjct:   84 PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIY 236          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.233e-26
Identity = 63/153 (41.18%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+++ F++RLG RV  +++ LFP  P+   RRV+TF NQ D+I FRHH Y
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFP-VPKDDSRRVITFANQDDYISFRHHVY 234          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_ASHGO (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.610e-26
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYI 515
            DE+S+ L     PK+++TT R  S+R   F  E+  + P S    RG Y +K +++  +K   T ++V+H +R  P AL I   P GPTA F L  +VLR DI N GN +   P L+ +NF T LG RV ++++ +FP   +    RV+TF N+ DFI  R H Y+
Sbjct:   68 DEYSA-LSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKRDSPRVITFANRGDFISVRQHVYV 232          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_CANGA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.103e-26
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 3
Query:   57 KILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYI 515
            ++++TT R  SSR   F  E+  + PN+    RG Y +  ++   KK   T +IV+H +R  P +L +   P GPTA F L  +VLR DI N GN +   P L+ +NF T LG+RV  ++++LFP  P+    RV+TF N+ DFI  R H Y+
Sbjct:   85 RVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYV 237          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYI 515
            P+I++TT R  S+R   F  E+  + PN+    RG Y +  +++  KK   T ++V+H +R  P +L I   P GPTA F L  +V+R DI N GN +   P L+ +NF T LG RV  +++ LF   P+    RV+TF N+ DFI  R H Y+
Sbjct:   86 PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYV 239          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP  P+    RV+TF NQ D+I FRHH Y
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP  P+    RV+TF NQ D+I FRHH Y
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP  P+    RV+TF NQ D+I FRHH Y
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP  P+    RV+TF NQ D+I FRHH Y
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234          
The following BLAST results are available for this feature:
BLAST of CX288522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YHPK_CAEEL3.466e-2940.52Brix domain-containing protein ZK795.3 OS=Caenorha... [more]
IMP4_SCHPO1.317e-2843.14U3 small nucleolar ribonucleoprotein protein imp4 ... [more]
IMP4_BOVIN1.233e-2641.18U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_ASHGO1.610e-2639.16U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_CANGA2.103e-2639.87U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_YEAST1.363e-2538.96U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_RAT1.363e-2540.52U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_PONAB1.363e-2540.52U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_MOUSE1.363e-2540.52U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_HUMAN1.363e-2540.52U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]

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Properties
Property NameValue
Genbank descriptionC02001D03SK IF1 Citrus clementina cDNA clone C02001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288522 ID=CX288522; Name=CX288522; organism=Citrus clementina; type=EST; length=566bp
TTGCGGGTAATGATGCTGATGAGTTTAGTTCTATTCTAAAGCAAGGATGC
GCCCCGAAGATATTGATCACTACATGTCGTTTCAATTCCAGTAGAGGACC
GGCCTTTATATCAGAGTTACTGTCTGTGATCCCAAATTCTCACTATTACA
AGAGAGGAACCTATGATTTGAAGAAGATTATAGAATATGCAAAGAAGAAG
GACTTCACTTCTATAATAGTTGTTCACACCAATAGGAGGGAACCAGATGC
TCTACTAATCATTGGCCTGCCTGATGGACCTACTGCCCATTTCAAGCTGT
CAAAGCTTGTTTTACGCAAGGATATTAAGAATCATGGAAATCCTACCGGT
CACATTCCGGAGCTAGTGTTGAATAACTTCGCAACACGCCTGGGTCATCG
TGTTGGGAGATTGATACAGTCACTTTTCCCTCAAAGTCCAGAATTCCGAG
GTCGTCGAGTGGTGACTTTTCACAATCAACGAGATTTCATATTCTTCCGA
CATCATCGGTATATATTTGAAACCAAAGAAAGTAAAGGGAGTGACGCAAA
TGGTAAGAAAGCGAAA
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