CX288522
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.466e-29 Identity = 62/153 (40.52%), Postives = 94/153 (61.44%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512 PKI+ITT R SSR F E+ + PN+ RG YD+K++++ +K +D T +I+ R PD +L+ LP GPTA F ++ +V+R DI N G + P L+ +N ++LGHR +++ LFP P+ +R++TF N D+I FRHH Y Sbjct: 78 PKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFP-VPKPDSKRIITFSNSEDYISFRHHVY 229
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.317e-28 Identity = 66/153 (43.14%), Postives = 89/153 (58.17%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512 PK+L+TT R SSR F E+ +IPNS+ RG + ++E A+ D T I+++H +R PD L+I LP GPT F L +VLR DI N G + P L+ N ++LG RV + +LFP P+ RVVTF N D+I FRHH Y Sbjct: 84 PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIY 236
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.233e-26 Identity = 63/153 (41.18%), Postives = 92/153 (60.13%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+++ F++RLG RV +++ LFP P+ RRV+TF NQ D+I FRHH Y Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFP-VPKDDSRRVITFANQDDYISFRHHVY 234
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_ASHGO (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.610e-26 Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 3 Query: 18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYI 515 DE+S+ L PK+++TT R S+R F E+ + P S RG Y +K +++ +K T ++V+H +R P AL I P GPTA F L +VLR DI N GN + P L+ +NF T LG RV ++++ +FP + RV+TF N+ DFI R H Y+ Sbjct: 68 DEYSA-LSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKRDSPRVITFANRGDFISVRQHVYV 232
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_CANGA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.103e-26 Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 3 Query: 57 KILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYI 515 ++++TT R SSR F E+ + PN+ RG Y + ++ KK T +IV+H +R P +L + P GPTA F L +VLR DI N GN + P L+ +NF T LG+RV ++++LFP P+ RV+TF N+ DFI R H Y+ Sbjct: 85 RVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYV 237
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25 Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYI 515 P+I++TT R S+R F E+ + PN+ RG Y + +++ KK T ++V+H +R P +L I P GPTA F L +V+R DI N GN + P L+ +NF T LG RV +++ LF P+ RV+TF N+ DFI R H Y+ Sbjct: 86 PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYV 239
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25 Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+TF NQ D+I FRHH Y Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25 Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+TF NQ D+I FRHH Y Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25 Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+TF NQ D+I FRHH Y Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25 Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3 Query: 54 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 512 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+TF NQ D+I FRHH Y Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVY 234 The following BLAST results are available for this feature:
BLAST of CX288522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288522 ID=CX288522; Name=CX288522; organism=Citrus clementina; type=EST; length=566bpback to top |