CX288522

Overview
NameCX288522
Unique NameCX288522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_YARLI (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.847e-23
Identity = 61/174 (35.06%), Postives = 96/174 (55.17%), Query Frame = 3
Query:    9 NDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKE 530
            ++ D+  S +     PK+++TT R  S+R   F  E+  + P S    RG   L  ++   K    + +IV+H +R  P A+ +   P GPTA+F L  +VLR D+ + GN +   P L+ +NF T LG RV ++++ LFP   +    RV+TF N+ DFI  R H Y+ +T+E
Sbjct:   64 DEIDDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYV-KTRE 236          
BLAST of CX288522 vs. ExPASy Swiss-Prot
Match: IMP4_DEBHA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii GN=IMP4 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.331e-23
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 3
Query:   18 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKES 533
            DE+S+ L     PK+LITT R  S +   F  E+  + PNS    RG Y +  ++   ++   + +I++H +R  P +L I   P GP+  F L  + LR D+   GN +   P LV  NF + LG RV ++++ LFP   +    RV+TF N  DFI  RHH Y+ +TK++
Sbjct:   68 DEYSA-LSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPEIGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYV-KTKDT 237          
The following BLAST results are available for this feature:
BLAST of CX288522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
IMP4_YARLI4.847e-2335.06U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_DEBHA6.331e-2336.05U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]

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Properties
Property NameValue
Genbank descriptionC02001D03SK IF1 Citrus clementina cDNA clone C02001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288522 ID=CX288522; Name=CX288522; organism=Citrus clementina; type=EST; length=566bp
TTGCGGGTAATGATGCTGATGAGTTTAGTTCTATTCTAAAGCAAGGATGC
GCCCCGAAGATATTGATCACTACATGTCGTTTCAATTCCAGTAGAGGACC
GGCCTTTATATCAGAGTTACTGTCTGTGATCCCAAATTCTCACTATTACA
AGAGAGGAACCTATGATTTGAAGAAGATTATAGAATATGCAAAGAAGAAG
GACTTCACTTCTATAATAGTTGTTCACACCAATAGGAGGGAACCAGATGC
TCTACTAATCATTGGCCTGCCTGATGGACCTACTGCCCATTTCAAGCTGT
CAAAGCTTGTTTTACGCAAGGATATTAAGAATCATGGAAATCCTACCGGT
CACATTCCGGAGCTAGTGTTGAATAACTTCGCAACACGCCTGGGTCATCG
TGTTGGGAGATTGATACAGTCACTTTTCCCTCAAAGTCCAGAATTCCGAG
GTCGTCGAGTGGTGACTTTTCACAATCAACGAGATTTCATATTCTTCCGA
CATCATCGGTATATATTTGAAACCAAAGAAAGTAAAGGGAGTGACGCAAA
TGGTAAGAAAGCGAAA
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