CX288532
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.397e-31 Identity = 70/181 (38.67%), Postives = 109/181 (60.22%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S + G I KQRW Y+ +KQL++R+I+A G + L+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL++GG+ +R F I D IEA+ +IEN R +G I N+GNP NE ++++LAEM+ + + + +V S ++YG+GY D + R P + Sbjct: 446 EDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSI 623
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31 Identity = 74/184 (40.22%), Postives = 106/184 (57.61%), Query Frame = 2 Query: 32 VLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 V ED S I G I KQRW Y+ +KQL++R+++A G + GL FT+ RPFNW+GPR+D ++ G R + NL+ +KLVDGG +R F I D IEA+ +IEN +G I N+GNP NE ++RQLAE++ + + + DV S +YG+GY D + R P + Sbjct: 443 VFDEDDSSLIVGPINKQRWIYSVSKQLLDRVLWAYGEKEGLRFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDISDGIEALFRIIENKDNNCDGQIINIGNPDNEASIRQLAELLLASFERHPLRQHFPPFAGFRDVESSSYYGKGYQDVEHRKPSI 623
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31 Identity = 73/189 (38.62%), Postives = 109/189 (57.67%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD----------VSSKEFYGEGYDDSDKRIPDM 574 ED SP I G I +QRW Y+ +KQL++R+I+A G ++ L+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I +AIEA+ +IEN +G I N+G+P NE +++ +AE + E + E P D V S+ FYG+GY D R P + Sbjct: 448 EDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFRPFNWMGPRLD---SLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKRCFTDISEAIEALFRVIENKDGLCDGQIINIGSPDNEASIKVMAETLVEKFE--------EHPLRDQFPPFAGYNLVESQSFYGDGYQDVQHRRPSI 625
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31 Identity = 73/188 (38.83%), Postives = 108/188 (57.45%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S I G + K RW Y+ +KQLI+R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + Sbjct: 446 EDHSNLIVGPVNKPRWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.384e-31 Identity = 76/181 (41.99%), Postives = 105/181 (58.01%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S + G + KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D +D G R + NL+ P++L DGG+ +R F I D IEA+ +I+N A NG I N+GNP NE ++RQL E + + + G DV SK FYG GY D R P + Sbjct: 449 EDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIIDNDNDACNGQIINIGNPENEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGTGYQDVAHRKPSI 625
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.384e-31 Identity = 76/181 (41.99%), Postives = 105/181 (58.01%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D +D G R + NL+ P++L DGG+ +R F I D IEA+ +++N NG I N+GNP NE ++RQL E + + + G DV SK FYG GY D + R P + Sbjct: 449 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGAGYQDVEHRKPSI 625
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31 Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + Sbjct: 446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31 Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + Sbjct: 446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31 Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + Sbjct: 446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31 Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2 Query: 41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574 ED S I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D ++ G R + NL+ P+KL+DGG+ +R F I+D IEA+ +IEN R +G I N+GNP NE ++ +L EM+ + K +G +E S +YG+GY D + R P + Sbjct: 446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623 The following BLAST results are available for this feature:
BLAST of CX288532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288532 ID=CX288532; Name=CX288532; organism=Citrus clementina; type=EST; length=592bpback to top |