CX288532

Overview
NameCX288532
Unique NameCX288532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig483 contig Ccv1_Contig483:35..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.397e-31
Identity = 70/181 (38.67%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  + G I KQRW Y+ +KQL++R+I+A G +  L+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +
Sbjct:  446 EDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31
Identity = 74/184 (40.22%), Postives = 106/184 (57.61%), Query Frame = 2
Query:   32 VLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            V  ED S  I G I KQRW Y+ +KQL++R+++A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+    +KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++RQLAE++   + +  +           DV S  +YG+GY D + R P +
Sbjct:  443 VFDEDDSSLIVGPINKQRWIYSVSKQLLDRVLWAYGEKEGLRFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDISDGIEALFRIIENKDNNCDGQIINIGNPDNEASIRQLAELLLASFERHPLRQHFPPFAGFRDVESSSYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31
Identity = 73/189 (38.62%), Postives = 109/189 (57.67%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD----------VSSKEFYGEGYDDSDKRIPDM 574
            ED SP I G I +QRW Y+ +KQL++R+I+A G ++ L+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I +AIEA+  +IEN     +G I N+G+P NE +++ +AE + E +         E P  D          V S+ FYG+GY D   R P +
Sbjct:  448 EDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFRPFNWMGPRLD---SLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKRCFTDISEAIEALFRVIENKDGLCDGQIINIGSPDNEASIKVMAETLVEKFE--------EHPLRDQFPPFAGYNLVESQSFYGDGYQDVQHRRPSI 625          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31
Identity = 73/188 (38.83%), Postives = 108/188 (57.45%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQLI+R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.384e-31
Identity = 76/181 (41.99%), Postives = 105/181 (58.01%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  + G + KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +I+N   A NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D   R P +
Sbjct:  449 EDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIIDNDNDACNGQIINIGNPENEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGTGYQDVAHRKPSI 625          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.384e-31
Identity = 76/181 (41.99%), Postives = 105/181 (58.01%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +++N     NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D + R P +
Sbjct:  449 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGAGYQDVEHRKPSI 625          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31
Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31
Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31
Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31
Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSI 623          
The following BLAST results are available for this feature:
BLAST of CX288532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_KLEP31.397e-3138.67Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SODGM1.825e-3140.22Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHESH1.825e-3138.62Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO271.825e-3138.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS2.384e-3141.99Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF52.384e-3141.99Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHISS3.113e-3138.30Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIDS3.113e-3138.30Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIBS3.113e-3138.30Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOUT3.113e-3138.30Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02001E03SK IF1 Citrus clementina cDNA clone C02001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288532 ID=CX288532; Name=CX288532; organism=Citrus clementina; type=EST; length=592bp
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGAGGATGG
ACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGGGTTCTG
GCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCTTGTCGA
CGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTATTGAAG
CTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCATATTTTC
AATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGCTGAGAT
GATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGGAGGAGC
CAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATATGATGAT
AGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAG
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