CX288532

Overview
NameCX288532
Unique NameCX288532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig483 contig Ccv1_Contig483:35..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHIF8 (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri serotype 5b (strain 8401) GN=arnA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 71/188 (37.77%), Postives = 107/188 (56.91%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+  PFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSCYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.668e-30
Identity = 71/188 (37.77%), Postives = 107/188 (56.91%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+  PFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYHIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSCYYGKGYQDVEHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.668e-30
Identity = 76/194 (39.18%), Postives = 110/194 (56.70%), Query Frame = 2
Query:   14 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDM 574
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSI 624          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_SALG2 (Bifunctional polymyxin resistance protein arnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.308e-29
Identity = 70/182 (38.46%), Postives = 106/182 (58.24%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDM 574
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     +L+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILSLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSI 623          
BLAST of CX288532 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 72/190 (37.89%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   41 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEV---------YAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTI 580
            E+ S  + G+I+ QRW Y+ +KQL++R+I+A G +N L FTI RPFNWIGP +D     +  +    RV      NL+   P+ +V+ G  +R F  I D IEA+  +I+N   + N  I N+GNPHNE T+ QL +++  +         + K SG   L       S   +YGEGY D D+R P++ I
Sbjct:  445 EENSNLVTGAIKNQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQN---ARVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKIIINIIYSNNRNYNFPKFSGFNML-------SGTNYYGEGYQDIDRRKPNIDI 624          
The following BLAST results are available for this feature:
BLAST of CX288532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_SHIF85.871e-3037.77Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIFL7.668e-3037.77Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA77.668e-3039.18Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALG21.308e-2938.46Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_WIGBR4.208e-2837.89Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02001E03SK IF1 Citrus clementina cDNA clone C02001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288532 ID=CX288532; Name=CX288532; organism=Citrus clementina; type=EST; length=592bp
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGAGGATGG
ACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGGGTTCTG
GCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCTTGTCGA
CGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTATTGAAG
CTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCATATTTTC
AATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGCTGAGAT
GATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGGAGGAGC
CAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATATGATGAT
AGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAG
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