CX288534

Overview
NameCX288534
Unique NameCX288534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:43..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  240 GKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNY 599
            G I++RE+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +             +YYGRGPIQLT   NY
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLTHQSNY 131          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.623e-28
Identity = 64/121 (52.89%), Postives = 79/121 (65.29%), Query Frame = 3
Query:  237 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNY 599
            +G I++ ++F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     +            YYGRGPIQLT   NY
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-----------YYGRGPIQLTGQSNY 134          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 75/183 (40.98%), Postives = 94/183 (51.37%), Query Frame = 3
Query:   72 NCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGD--GGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLTWNYNY 599
            NCG    C    CCS+FG+CG T  +C  GC+S       G C    GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+  E+  AS DYCD N   YPC  GK Y+GRGPIQL+WNYNY
Sbjct:   26 NCG----CAPNLCCSQFGYCGSTDAYCGTGCRS-------GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNY 179          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 3
Query:  237 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNY 599
            +G I++ ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQLT   NY
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNQNNY 133          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 70/184 (38.04%), Postives = 99/184 (53.80%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD---PNYPC-RGK-YYGRGPIQLTWNYNY 599
            +A +CG    C   +CCS++G+CG   D+C  GCQ+           P D  A +   +  I++ E F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +C+  E+   S +YCD     +PC  GK YYGRGP+Q++WN+NY
Sbjct:   24 AAQSCG----CASDQCCSKWGFCGTGSDYCGTGCQAG----------PCDVPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY 179          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 71/185 (38.38%), Postives = 94/185 (50.81%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNY 599
            +A NCG    C    CCS+FG+CG T  +C DGCQS  C     G      G  G GG     +  + F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP+Q++WNYNY
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY 190          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 3
Query:  237 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNY 599
            +G I++ ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQLT   NY
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNRNNY 133          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 63/130 (48.46%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  213 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNY 599
            G A  G  +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYCF  E+  A+S            YYGRGPIQLT   NY
Sbjct:   26 GAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP----------PYYGRGPIQLTGQSNY 142          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 3
Query:   75 CGSGV---VCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPCRG--KYYGRGPIQLTWNYNY 599
            CG+ V    C    CCS  GWCG   D+C    CQ  C+  V G      G +        +++  +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C         +D+C   ++PC    KY  RGPIQLT N+NY
Sbjct:   72 CGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY 250          
BLAST of CX288534 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 71/188 (37.77%), Postives = 94/188 (50.00%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLTWNYNY 599
            SA NCG    C    CCS++G+CG   D+C DGC+S  C     G      G  G GG  G   + +  E F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP+Q++WNYNY
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY 198          
The following BLAST results are available for this feature:
BLAST of CX288534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC3.297e-2850.00Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY5.623e-2852.89Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI4_BRANA9.591e-2840.98Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIP_TOBAC1.636e-2752.07Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI6_ORYSJ1.636e-2738.04Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE2.791e-2738.38Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIQ_TOBAC4.760e-2751.24Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ8.120e-2748.46Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI1.385e-2636.81Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI5_ORYSJ1.809e-2637.77Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC02001E05SK IF1 Citrus clementina cDNA clone C02001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288534 ID=CX288534; Name=CX288534; organism=Citrus clementina; type=EST; length=601bp
AAATGAGGCTTATTGCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTT
GTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGG
AGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAATAGACCACT
GTTGTGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGT
GATCCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCAT
CTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGAT
GCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAA
GCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGA
AATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGC
CCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAA
GTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGG
GAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACT
T
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