CX288539

Overview
NameCX288539
Unique NameCX288539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.481e-63
Identity = 110/201 (54.73%), Postives = 144/201 (71.64%), Query Frame = 1
Query:    7 SKRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            + +V TP+     + +WQ+AKA+V  ND GVHQL++HWL THA IEPF++A +RQLS +HPI+KLL PH R T+ INA ARQ L+NA GV+ES     ++ MEMSA  YK+W F  + LPADL++RG+AV D + PHG++LLIEDYPYA DGL IWSAI+ WV  Y S YY +  +I  D ELQ+W+ E    GH D ++E
Sbjct:  486 TSKVYTPSDQGVESSIWQLAKAYVAVNDVGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLYPHFRDTMNINASARQLLVNAGGVLESTVFQSKFAMEMSAVVYKDWVFPDQALPADLVKRGVAVEDSSSPHGVRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNE 686          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.300e-63
Identity = 111/201 (55.22%), Postives = 145/201 (72.14%), Query Frame = 1
Query:   10 KRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAY-KNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            KR  T  +DAT +WLW++AKAHV ++D G HQLV+HWLRTHAC+EP+I+A +RQLS MHP+Y+LL PH RYT+EINALAR+ LINADG+IE  F  G+Y +E+S+ AY   W+F+ E LP DLI RG+AV        L+L I+DYPYA DGLLIW +I+ W   YV  YY +   +  D+EL++W+ E    GHAD + E
Sbjct:  521 KRAFTHGSDATESWLWKLAKAHVLTHDTGYHQLVSHWLRTHACVEPYIIATNRQLSRMHPVYRLLHPHFRYTMEINALAREALINADGIIEEAFLAGKYSIELSSVAYGAAWQFNTEALPEDLINRGLAV--RRDDGELELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDE 719          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.309e-63
Identity = 106/196 (54.08%), Postives = 143/196 (72.96%), Query Frame = 1
Query:   16 VLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            V  PA +    ++W +AKA+V  ND+  HQLV+HWL THA +EPF+LA +RQLS +HP+YKLL PH R T+ IN+LAR++L+NADG+IE  F  GRY +E+SA  YK+W    + LP DL++RG+AV DP+ PHG+KL+IEDYPYA+DGL IW AI+ WV  YV+ YY +   +  D ELQ+W+ E +  GH DL+
Sbjct:  374 VYVPAYEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVLATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYALELSAVIYKDWSLHDQALPNDLVKRGVAVKDPSAPHGVKLVIEDYPYASDGLEIWDAIKSWVVEYVAFYYKSDEVLQQDSELQAWWKELVQVGHGDLK 569          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.765e-62
Identity = 110/197 (55.84%), Postives = 144/197 (73.10%), Query Frame = 1
Query:   13 RVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            +V  PA++     +W +AKA V  ND+  HQLV+HWL THA +EPFI+A +R LS +HPI+KLL PH R T+ INALAR  L+NA+G+IES F  G Y MEMSA  YK+W F  +GLP DLI+RG+AV DP+ PHG++LLIEDYPYA+DGL IW+AI+ WV  YV+ YY + + I  D ELQ+++ E +  GH DL+
Sbjct:  492 KVYLPASEGVEASIWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYAMEMSAVVYKDWVFPDQGLPNDLIKRGVAVKDPSSPHGVRLLIEDYPYASDGLEIWAAIKSWVEEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDLK 688          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.061e-61
Identity = 104/201 (51.74%), Postives = 144/201 (71.64%), Query Frame = 1
Query:    1 ARSKRVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            A+SK      + +   W+W++AKA+V  ND+G HQLV+HWL THA +EPF+++ +R LS  HP++KLL PH R T+ INALARQ LINA G+ E    PG++ + MSA  YK+W+F ++GLP DLI+RGMAV DP+ P+ ++LL+ DYPYAADGL IW AIE +V  Y++ YYPN   +  D E+Q+W+ E+   GH DL+
Sbjct:  479 AKSKVYTPVPSGSVEGWVWELAKAYVAVNDSGWHQLVSHWLNTHAVMEPFVISTNRHLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFPGKFALGMSAVVYKDWKFTEQGLPDDLIKRGMAVEDPSSPYKVRLLVSDYPYAADGLAIWHAIEQYVSEYLAIYYPNDGVLQGDTEVQAWWKETREVGHGDLK 679          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.365e-61
Identity = 106/198 (53.54%), Postives = 142/198 (71.72%), Query Frame = 1
Query:   16 VLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            V  PA +   + +W +AKA+V  ND+  HQLV+HWL THA +EPF++A +R LS +HPIYKLL PH R T+ IN+LAR +L+N  G+IE  F  GRY MEMS+  YKNW F ++ LPADLI+RGMA+ DP+ P G+KL++EDYPYA DGL IW+ I+ WV  YVS YY +  ++  D ELQ+W+ E +  GH D ++E
Sbjct:  489 VYQPALEGVESSIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSCLHPIYKLLYPHYRDTMNINSLARLSLVNDGGIIEKTFLWGRYSMEMSSKVYKNWVFTEQALPADLIKRGMAIEDPSSPCGVKLVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNE 686          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 107/199 (53.77%), Postives = 140/199 (70.35%), Query Frame = 1
Query:   13 RVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            +V  PA +   + +W +AKA+V  ND+  HQLV+HWL THA +EPFI+A +R LS +HPIYKLL PH R T+ IN LAR +L+N  GVIE  F  GRY +EMSA  YK+W F  + LPADLI+RGMA+ DP+ PHG++L+IEDYPYA DGL IW AI+ WV  YV  YY +   + +D ELQ+ + E +  GH D ++E
Sbjct:  484 QVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSLVNDGGVIEQTFLWGRYSVEMSAVVYKDWVFTDQALPADLIKRGMAIEDPSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNE 682          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.935e-60
Identity = 109/198 (55.05%), Postives = 142/198 (71.72%), Query Frame = 1
Query:   13 RVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTL-EINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            +V+ PA +   + +W +AKA+V  ND+  HQL++HWL THA IEPF++A +RQLS +HPI KLL PH R T+  INALAR +LINA+G+IE  F P +Y +EMS+A YK W F  + LP DLI+R MAV D + P+GL+LLIEDYPYA DGL IW+AI+ WV  YVS YY   + I +D ELQ W+ E +  GH DL+
Sbjct:  490 KVILPADEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVVHPINKLLAPHYRDTMMNINALARDSLINANGLIERSFLPSKYAVEMSSAVYKYWVFTDQALPNDLIKRNMAVKDSSSPYGLRLLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLK 687          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.891e-59
Identity = 106/199 (53.27%), Postives = 137/199 (68.84%), Query Frame = 1
Query:   13 RVLTPAADATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHE 609
            +V TPA       +WQ AKA+V  ND G+HQL++HWL THA IEPF++A +R LS +HPI+KLL PH R T+ INALAR+ L   DG  E+   P +Y MEMSAAAYK+W F ++ LPADL++RG+AV D + PHG++LLI DYPYA DGL IW+AI+ WV  Y   YY +   +  D ELQ+W+ E    GH D + E
Sbjct:  487 KVYTPADQGVEGSIWQFAKAYVAVNDMGIHQLISHWLNTHAVIEPFVVATNRHLSVLHPIHKLLHPHFRNTMNINALARETL-TYDGGFETSLFPAKYSMEMSAAAYKDWVFPEQALPADLLKRGVAVEDLSSPHGIRLLILDYPYAVDGLEIWAAIKSWVTEYCKFYYKSDETVEKDTELQAWWKELREEGHGDKKDE 684          
BLAST of CX288539 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.451e-58
Identity = 104/202 (51.49%), Postives = 137/202 (67.82%), Query Frame = 1
Query:   16 VLTPAA------DATSNWLWQIAKAHVCSNDAGVHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAAYKNWRFDKEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYAADGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWYAESINTGHADLR 603
            V TPAA       A   W+WQ+AKA+V  ND   HQL++HWL THA +EPF++A +RQLS  HP++KLL PH R T+ INALARQ LIN  G+ E    P ++ + MS+A YK+W F  + LP DL++RG+AVPDP  P+ ++LLIEDYPYA DGL +W AIE W   Y++ YYPN   +  D ELQ+W+ E    GH D++
Sbjct:  486 VYTPAARGGTGAGAVEWWVWQLAKAYVNVNDYCWHQLISHWLNTHAVMEPFVIATNRQLSVAHPVHKLLLPHYRDTMTINALARQTLINGGGIFEMTVFPRKHALAMSSAFYKDWSFADQALPDDLVKRGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIK 687          
The following BLAST results are available for this feature:
BLAST of CX288539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX1_SOLTU1.481e-6354.73Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX23_HORVU3.300e-6355.22Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXB_PHAVU4.309e-6354.08Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX1_LENCU4.765e-6255.84Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX1_HORVU1.061e-6151.74Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX3_PEA2.365e-6153.54Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_SOYBN7.607e-6053.77Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX2_PEA9.935e-6055.05Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXB_SOLLC2.891e-5953.27Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX2_ORYSJ5.451e-5851.49Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02001E10SK IF1 Citrus clementina cDNA clone C02001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288539 ID=CX288539; Name=CX288539; organism=Citrus clementina; type=EST; length=611bp
GCCCGATCAAAGCGCGTGCTCACACCTGCTGCCGACGCCACTTCCAATTG
GCTTTGGCAGATTGCCAAGGCCCATGTCTGCTCCAACGATGCCGGGGTGC
ACCAACTTGTTAACCATTGGTTACGTACGCATGCATGCATCGAGCCTTTT
ATTCTAGCAGCACATAGACAATTGAGTGCAATGCACCCAATTTACAAGCT
TTTGGATCCACATATGAGATACACATTGGAGATTAATGCTCTAGCTAGGC
AAAATTTAATCAATGCCGATGGTGTGATCGAGTCTTGCTTCACTCCTGGC
CGCTACTGCATGGAAATGAGCGCCGCCGCGTACAAAAATTGGCGGTTTGA
CAAGGAAGGCCTCCCCGCAGATCTCATCCGCAGAGGCATGGCAGTACCTG
ACCCAACACAGCCACATGGTTTGAAGTTGCTAATTGAGGACTACCCATAC
GCAGCAGACGGACTTCTAATTTGGTCAGCAATTGAGGATTGGGTGTGCAC
TTATGTGAGCCATTACTACCCAAATTCAAGCCAAATTTGTGACGACAAAG
AGCTACAATCATGGTACGCTGAGTCCATCAACACAGGCCATGCCGATCTT
CGCCACGAAAG
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