CX288542

Overview
NameCX288542
Unique NameCX288542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_ECO27 (Xaa-Pro dipeptidase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=pepQ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.981e-23
Identity = 67/176 (38.07%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ  MV+T+EPG YFI++LL P  E +  SK FN + I   K FGG+RIE +V++  N  +NMT
Sbjct:  263 SAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQ-FSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_ECO24 (Xaa-Pro dipeptidase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=pepQ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.981e-23
Identity = 67/176 (38.07%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ  MV+T+EPG YFI++LL P  E +  SK FN + I   K FGG+RIE +V++  N  +NMT
Sbjct:  263 SAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQ-FSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_SHIFL (Xaa-Pro dipeptidase OS=Shigella flexneri GN=pepQ PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 67/176 (38.07%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ  MV+T+EPG YFI++LL P  E +  SK FN + I   K FGG+RIE +V++  N  +NMT
Sbjct:  263 SAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRYTRILQPGMVLTIEPGIYFIESLLAPWREGQ-FSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: AMPP_ECOLI (Xaa-Pro aminopeptidase OS=Escherichia coli (strain K12) GN=pepP PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 67/195 (34.36%), Postives = 99/195 (50.77%), Query Frame = 3
Query:    3 TCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIMAGA 584
            T +FPVNGKFT  Q  IY+ VL++    +   +PG   +++     +I++  L K G++ G+VDE++A      F  HGL H+LG+D HD G Y +   R  EPG             MV+TVEPG Y      VP                       G+RIE D+++T  G++N+T SV ++  +IEA+M  A
Sbjct:  274 TRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPG-------------MVLTVEPGLYIAPDAEVPEQYRGI-----------------GIRIEDDIVITETGNENLTASVVKKPEEIEALMVAA 438          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_SODGM (Xaa-Pro dipeptidase OS=Sodalis glossinidius (strain morsitans) GN=pepQ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.790e-23
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   36 SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG-NVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY---PKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            SD + +  A+     A+I  ++ GV ++D H      I + LK+  ++ G + D M+   L   F+PHGLGH LG+  HD  G+    +GT  + +     LR  R LQ RMV+T+EPG YFI++LL P   N +  + FN   I  FK +GG+RIE ++++  N  +NMT
Sbjct:  267 SDFAALIAAMNSEQQALIATIETGVNYIDYHLQMHGRIAKLLKQFDILSGLSEDAMVTEGLTLPFLPHGLGHPLGLQVHDVAGFMQDDRGTSLAPQSRYTHLRCTRVLQPRMVLTIEPGLYFIESLLAPWRAN-TFGRHFNWSRIESFKPYGGIRIEDNIVIHDNHIENMT 436          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_AERS4 (Xaa-Pro dipeptidase OS=Aeromonas salmonicida (strain A449) GN=pepQ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 58/154 (37.66%), Postives = 87/154 (56.49%), Query Frame = 3
Query:   84 VINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY---PKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            +I  +KPG  + ++H      +   L+   ++  +VDEM+   +  VF PHGLGHFLG+  HD GG+    +GT  S       LR  R ++   V T+EPG YFID+LL P  ++E   K  N   +   + FGG+RIE ++++ ANG +NMT
Sbjct:  283 IIEEIKPGRRYSELHLQMHHKLARLLQSVELVDMSVDEMIHTGVTNVFFPHGLGHFLGLQVHDAGGFMQDERGTHLSAPEQFPYLRCTRVMEVGQVFTIEPGLYFIDSLLEPLRQSEQ-GKRVNWNKVEALRPFGGIRIEDNIVLHANGVENMT 435          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_SHIBS (Xaa-Pro dipeptidase OS=Shigella boydii serotype 4 (strain Sb227) GN=pepQ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.513e-22
Identity = 66/176 (37.50%), Postives = 94/176 (53.41%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ  MV+T+EPG YFI++LL P  E +  SK FN + I   K F G+RIE +V++  N  +NMT
Sbjct:  263 SAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQ-FSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_SHIB3 (Xaa-Pro dipeptidase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=pepQ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.513e-22
Identity = 66/176 (37.50%), Postives = 94/176 (53.41%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ  MV+T+EPG YFI++LL P  E +  SK FN + I   K F G+RIE +V++  N  +NMT
Sbjct:  263 SAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQ-FSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_SHIDS (Xaa-Pro dipeptidase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pepQ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.580e-22
Identity = 66/176 (37.50%), Postives = 94/176 (53.41%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R L   MV+T+EPG YFI++LL P  E +  SK FN + I   K FGG+RIE +V++  N  +NMT
Sbjct:  263 SAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILLPGMVLTIEPGIYFIESLLAPWREGQ-FSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_KLEP7 (Xaa-Pro dipeptidase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=pepQ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.580e-22
Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 3
Query:   81 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            A+I+ MK G  ++D H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R ++ RMV+T+EPG YFI++LL P  E    SK FN + I   K FGG+RIE +V++  N  +NMT
Sbjct:  283 ALISTMKAGTSYIDYHIQFHQRIAKLLRKHQLVTDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDTGTHLAAPSKYPYLRCTRIIEPRMVLTIEPGIYFIESLLAPWREG-PFSKHFNWQKIDAMKPFGGIRIEDNVVIHENSIENMT 437          
The following BLAST results are available for this feature:
BLAST of CX288542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PEPQ_ECO273.981e-2338.07Xaa-Pro dipeptidase OS=Escherichia coli O127:H6 (s... [more]
PEPQ_ECO243.981e-2338.07Xaa-Pro dipeptidase OS=Escherichia coli O139:H28 (... [more]
PEPQ_SHIFL5.199e-2338.07Xaa-Pro dipeptidase OS=Shigella flexneri GN=pepQ P... [more]
AMPP_ECOLI5.199e-2334.36Xaa-Pro aminopeptidase OS=Escherichia coli (strain... [more]
PEPQ_SODGM6.790e-2336.84Xaa-Pro dipeptidase OS=Sodalis glossinidius (strai... [more]
PEPQ_AERS41.158e-2237.66Xaa-Pro dipeptidase OS=Aeromonas salmonicida (stra... [more]
PEPQ_SHIBS1.513e-2237.50Xaa-Pro dipeptidase OS=Shigella boydii serotype 4 ... [more]
PEPQ_SHIB31.513e-2237.50Xaa-Pro dipeptidase OS=Shigella boydii serotype 18... [more]
PEPQ_SHIDS2.580e-2237.50Xaa-Pro dipeptidase OS=Shigella dysenteriae seroty... [more]
PEPQ_KLEP72.580e-2239.10Xaa-Pro dipeptidase OS=Klebsiella pneumoniae subsp... [more]

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Properties
Property NameValue
Genbank descriptionC02001F01SK IF1 Citrus clementina cDNA clone C02001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288542 ID=CX288542; Name=CX288542; organism=Citrus clementina; type=EST; length=587bp
TTACTTGCTCATTCCCTGTAAATGGGAAGTTTACTAGTGATCAGAGTCTT
ATATATAATGCCGTCCTCAAAGCTCACAATGCTGTCATAAATGCAATGAA
ACCTGGAGTGTGCTGGGTGGATATGCACAAATTGGCAGAGAAAATTATTC
TGGAGTCGCTGAAGAAGGGTGGTGTCATGGTTGGGAATGTGGATGAGATG
ATGGCTGCACGATTGGGTGCTGTTTTCATGCCTCATGGTCTTGGGCATTT
CTTGGGTATTGACACTCATGATCCTGGCGGCTACCCAAAGGGAACAGAAA
GATCAAAAGAACCTGGCTTAAAATCTCTACGTACAGTTAGAGAACTCCAG
GAGAGAATGGTGATCACAGTGGAGCCTGGATGTTATTTCATTGATGCTCT
GTTGGTCCCGGCCATGGAAAATGAAAGCACTTCCAAGTTTTTTAATCATG
AAGTAATTGGCAGATTCAAAGATTTTGGCGGTGTTCGCATTGAAAGTGAT
GTGCTTGTCACTGCCAATGGAAGCAAGAACATGACTAGCGTACCTCGGGA
AATATCAGATATTGAAGCCATAATGGCAGGCGCTCCA
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