CX288551

Overview
NameCX288551
Unique NameCX288551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig131 contig Ccv1_Contig131:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  307 AWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVA------DGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            A RLY++++D+T P+  YRW+    ++A++ +R+  V+                      P  DP +E A      +  +LPT   DEF+PFIRRLPEFKFWYS  +A   A V +FF
Sbjct:   18 AVRLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFF 135          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1
Query:  316 LYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD--GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            LYQ+YLDK TPHA  RW     +L ++ +R+   +                      P  D  ++  +    L   + S+EF+PFIRRLPEFKFWY+  +A  I+ V++ F
Sbjct:   27 LYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLVLSLF 137          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 1
Query:  316 LYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD--GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            LYQ+YLDK TPHA  RW     +L ++ +R+   +                      P  D  ++  +    L   + S+EF+PFIRRLPEFKFWY+  +A  I+ +++ F
Sbjct:   27 LYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLLLSLF 137          
The following BLAST results are available for this feature:
BLAST of CX288551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RER1_SCHPO2.558e-1636.44Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_SACPS8.516e-1234.23Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_YEAST2.478e-1133.33Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02001F10SK IF1 Citrus clementina cDNA clone C02001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288551 ID=CX288551; Name=CX288551; organism=Citrus clementina; type=EST; length=643bp
GCAAGATCTGGTCGCATTTCAATTCGCTTCCCTCAAATCAATTTGAGTCC
TTTTACGTGAACATCGAAAGACTCGTTTCAAGATCTGTGGTTGAAGTTCC
CTTTTTATCTTCGAAGTAAATTAGCTGTCAAAGAAAGAATCAAAAGAAAA
ACCCTCGCTTCTGTTTGGTGGGCGAGAAAGCTTGGGAAAATGAAAAGATA
GAATCTTGCATCTTTCTTTTAGGACTTTTCATACTTAGATTGAATGGAAG
GAATTGGAGGCGACACTGCCTCGGCGGCATCCCCTGTATCACAATGGGGA
CATGATGCTTGGAGGCTATATCAGTATTACCTGGACAAGACTACTCCACA
TGCAGTTTATAGGTGGATTGGAACCCTTGTAATTTTGGCAATCTACTGTT
TGCGGGTTTTTTATGTGCAAGGATTCTACATCATATCCTATGGTCTTGGG
ATCTATCTCCTGAATTTGCTTATTGGGTTTTTGTCGCCTCTGGTTGATCC
TGAAATCGAAGTCGCTGATGGGCCTTTGTTGCCGACAAAGGGTTCTGATG
AATTCAAGCCTTTTATTCGCCGACTCCCAGAGTTTAAATTTTGGTACTCC
ATGACCAAGGCTTTCTGCATAGCTTTTGTAATGACATTCTTTT
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