CX288553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60 Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1 Query: 1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL G GWV+WR++E LP+EL+F+++YLG TF +NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K Sbjct: 149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2) HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60 Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1 Query: 1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL G GWV+WR++E LP+EL+F+++YLG TF +NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K Sbjct: 149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60 Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1 Query: 1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL G GWV+WR++E LP+EL+F+++YLG TF +NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K Sbjct: 149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60 Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1 Query: 1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL G GWV+WR++E LP+EL+F+++YLG TF +NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K Sbjct: 149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60 Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1 Query: 1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL G GWV+WR++E LP+EL+F+++YLG TF +NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K Sbjct: 149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2) HSP 1 Score: 228.024 bits (580), Expect = 3.129e-59 Identity = 107/212 (50.47%), Postives = 147/212 (69.34%), Query Frame = 1 Query: 1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 GKP +KPN+V G VQ+CW KFARY++VEL+E+ + G MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL G GWV+WR++E LP+EL+F+++YLG TF +NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K Sbjct: 149 GKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2) HSP 1 Score: 221.861 bits (564), Expect = 2.242e-57 Identity = 100/205 (48.78%), Postives = 139/205 (67.80%), Query Frame = 1 Query: 16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGL 630 KP++V + QVCWEKF Y+++EL+EV +SE + ++ ++ VDE TI + ILG T G+F+D+ LNDL+ + N + IHVD ASG PF+ P LEWDFRLP V SIN SGHKYGLVY G+GW++WR+KE LPEEL+F ++YLG PT +NFS+ +SQ+I QYY +R G+EGYR + + A+ L + + Sbjct: 150 KPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAV 354
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 1.898e-56 Identity = 97/207 (46.86%), Postives = 139/207 (67.15%), Query Frame = 1 Query: 16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 +PN++ + QVCWEKF Y++V+++ V + + + +D K E+VDE TI + ILG T G+F+D+ LL++ + N+ IH+D ASG PF+ PEL WDFRL V SIN SGHKYGLVY G+GW++W++KE LP+ELIF ++YLG PT +NFS+ +SQ+I QYY +R GFEGYR + E + A+ L + +EK Sbjct: 155 RPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEK 361
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 2.479e-56 Identity = 97/207 (46.86%), Postives = 140/207 (67.63%), Query Frame = 1 Query: 16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 +PN++ + QVCWEKF Y++V+++ V + + + +D K ++VDE TI V ILG T G+F+D++LL++ + N+ IH+D ASG PF+ PEL WDFRL V SIN SGHKYGLVY G+GW++W++KE LP+ELIF ++YLG PT +NFS+ +SQ+I QYY +R GFEGYR + E + A+ L + +EK Sbjct: 155 RPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDEKVEAYNETNEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEK 361
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 5.523e-56 Identity = 98/207 (47.34%), Postives = 140/207 (67.63%), Query Frame = 1 Query: 16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636 KPN+V + QVCWEKF Y++++++ V + + + ++ + ++ VDE TI V ILG T G ++D+ LN+ L E N +T + IHVDAASGGF PF+ P++ WDFRL V SIN SGHKYGLVY GIGWV+W+++ LPEELIF ++YLG + PT +NFS+ +S +I QYY +R GFEGYR + + + A L +E+ Sbjct: 152 KPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQ 358 The following BLAST results are available for this feature:
BLAST of CX288553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288553 ID=CX288553; Name=CX288553; organism=Citrus clementina; type=EST; length=638bpback to top |