CX288553

Overview
NameCX288553
Unique NameCX288553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12284 contig Ccv1_Contig12284:610..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.129e-59
Identity = 107/212 (50.47%), Postives = 147/212 (69.34%), Query Frame = 1
Query:    1 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            GKP +KPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K
Sbjct:  149 GKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.242e-57
Identity = 100/205 (48.78%), Postives = 139/205 (67.80%), Query Frame = 1
Query:   16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGL 630
            KP++V  +  QVCWEKF  Y+++EL+EV +SE +  ++    ++ VDE TI +  ILG T  G+F+D+  LNDL+ + N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SGHKYGLVY G+GW++WR+KE LPEEL+F ++YLG   PT  +NFS+ +SQ+I QYY  +R G+EGYR +     + A+ L + +
Sbjct:  150 KPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAV 354          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.898e-56
Identity = 97/207 (46.86%), Postives = 139/207 (67.15%), Query Frame = 1
Query:   16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            +PN++  +  QVCWEKF  Y++V+++ V + + +  +D  K  E+VDE TI +  ILG T  G+F+D+ LL++ +   N+       IH+D ASG    PF+ PEL WDFRL  V SIN SGHKYGLVY G+GW++W++KE LP+ELIF ++YLG   PT  +NFS+ +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK
Sbjct:  155 RPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEK 361          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.479e-56
Identity = 97/207 (46.86%), Postives = 140/207 (67.63%), Query Frame = 1
Query:   16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            +PN++  +  QVCWEKF  Y++V+++ V + + +  +D  K  ++VDE TI V  ILG T  G+F+D++LL++ +   N+       IH+D ASG    PF+ PEL WDFRL  V SIN SGHKYGLVY G+GW++W++KE LP+ELIF ++YLG   PT  +NFS+ +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK
Sbjct:  155 RPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDEKVEAYNETNEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEK 361          
BLAST of CX288553 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.523e-56
Identity = 98/207 (47.34%), Postives = 140/207 (67.63%), Query Frame = 1
Query:   16 KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 636
            KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+  LN+ L E N +T +   IHVDAASGGF  PF+ P++ WDFRL  V SIN SGHKYGLVY GIGWV+W+++  LPEELIF ++YLG + PT  +NFS+ +S +I QYY  +R GFEGYR + +   + A  L   +E+
Sbjct:  152 KPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQ 358          
The following BLAST results are available for this feature:
BLAST of CX288553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
DCEB_ECO578.234e-6050.94Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL8.234e-6050.94Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI8.234e-6050.94Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL68.234e-6050.94Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO578.234e-6050.94Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL63.129e-5950.47Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_LISMO2.242e-5748.78Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEC_LISIN1.898e-5646.86Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISMO2.479e-5646.86Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN5.523e-5647.34Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionC02001F12SK IF1 Citrus clementina cDNA clone C02001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288553 ID=CX288553; Name=CX288553; organism=Citrus clementina; type=EST; length=638bp
GGAAAGCCCTTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCAGGT
CTGCTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTGAAGGAAGTGA
AGCTGTCGGAAGGCTACTACGTGATGGACCCAGCCAAAGCTGTAGAAATG
GTGGATGAAAACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTCAA
TGGAGAATTTGAAGATGTCAAGCTCTTGAACGACCTTTTGACAGAGAAGA
ACAAGGAAACAGGATGGGATACTCCAATTCATGTTGATGCTGCTAGTGGT
GGCTTCATTGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTT
GCCGCTGGTGAAGAGTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGT
ATGCTGGTATTGGTTGGGTTGTTTGGAGAAACAAAGAAGACTTGCCTGAA
GAACTCATCTTCCACATCAATTACCTAGGAGCTGATCAACCCACCTTCAC
CCTCAATTTTTCTAAAGGTTCTAGCCAAGTAATTGCTCAGTACTACCAAC
TAATCCGCTTAGGTTTTGAGGGATACCGCAATGTGATGGAGAATTGTCAC
GAAAATGCAATGGTGCTGAAAGAAGGACTAGAGAAAAC
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