CX288558

Overview
NameCX288558
Unique NameCX288558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11470 contig Ccv1_Contig11470:404..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 45/146 (30.82%), Postives = 71/146 (48.63%), Query Frame = 2
Query:    8 VRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSAT-DPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQ 442
            +RA++Y+ AQ L +   C L++       T      + L  G     GL  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARS G A+       W + W++W+GP +G ++A F ++
Sbjct:  107 LRALLYVAAQLLASSLACILLRYLSGGMVTP----VHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMA---TGVWTNHWVYWIGPLLGGSLAGFVYE 240          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 44/152 (28.95%), Postives = 68/152 (44.74%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRA 457
            S +RA MY+ AQC G I G  L+       Y      A   +   +     G E I TF++V   F +TDP +    +     +   IG A       ++P     +NPARSLG + +  K   WD  W++W GP +G   +   +++I  +
Sbjct:  140 SPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLNK---WDSHWVYWFGPLVGGMASGLVYEYIFNS 279          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGA---NELADGYSTGTGLGAEIIGTFVLVYTVFSAT-DPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFI 448
            +L R+ +Y+ AQ  G+   C L++          GG A   + LADG     G+ AE + TF L+  + +   DP+R A     P+L  L +G       +A   +TG  +NPARS G A+   +   W   W++WVGP  G  +A   ++ +
Sbjct:  101 TLFRSALYVAAQLAGSSLACLLLRCLT-------GGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANT----VAGGALTGASMNPARSFGPALATGE---WAHHWVYWVGPLAGGPLAVVAYELL 239          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 45/155 (29.03%), Postives = 74/155 (47.74%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSAT-DPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASA 463
            +L R+ +Y+ AQ L +   C L++       T      + LA+G     G+ AE + TF L++ +++   DP++      +P   PL  G  V    +A   ++G  +NPARS G AV       W   W++WVGP  G  +A   ++    A+A
Sbjct:   96 TLFRSSLYIAAQMLASSAACFLLRWLTGGLATP----VHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL-----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVA---SGVWTHHWVYWVGPLAGGPLAVLVYECCFMAAA 238          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   17 VMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELAD---------GYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            V Y++AQ +G I    L+     S  T +   A+  A          GYS  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IPVT T +NPARS  A  I++   A +  W FWV P +G  I    ++ +L
Sbjct:   82 VGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   17 VMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELAD---------GYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            V Y++AQ +G I    L+     S  T +   A+  A          GYS  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IPVT T +NPARS  A  I++   A +  W FWV P +G  I    ++ +L
Sbjct:   82 VGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   17 VMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELAD---------GYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            V Y++AQ +G I    L+     S  T +   A+  A          GYS  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IPVT T +NPARS  A  I++   A +  W FWV P +G  I    ++ +L
Sbjct:   82 VGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 2
Query:   17 VMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELAD---------GYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            V Y++AQ +G I    L+     S  T +   A+  A          GYS  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IPVT T +NPARS  A  I++   A +  W FWV P +G  I    ++ +L
Sbjct:   82 VGYVIAQVVGGIVAAALLYLIA-SGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLL 227          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQPZ2_AGRT5 (Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 50/145 (34.48%), Postives = 71/145 (48.97%), Query Frame = 2
Query:   17 VMYMVAQCLGAICGCGL--VKAFQKSYYTRYGGGANELAD----GYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPV-LAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAA 430
            V Y++AQ  GAI       V A  K+     G  +N   +    GYS  + L  EII T   +  +  +T  +       VP   AP+ IG A+ ++HL +IPVT T +NPARS G A ++    A    W+FW+ P +G A  A
Sbjct:   82 VPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGR-------VPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPIVGGAAGA 218          
The following BLAST results are available for this feature:
BLAST of CX288558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
TIP42_MAIZE9.746e-1230.82Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
BIB_DROME9.746e-1228.95Neurogenic protein big brain OS=Drosophila melanog... [more]
TIP42_ORYSJ1.273e-1130.72Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE2.171e-1129.03Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
AQPZ_SHIFL2.836e-1131.17Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI2.836e-1131.17Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]
AQPZ_ECOL62.836e-1131.17Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO572.836e-1131.17Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
AQPZ2_AGRT52.836e-1134.48Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain... [more]

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Properties
Property NameValue
Genbank descriptionC02001G05SK IF1 Citrus clementina cDNA clone C02001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288558 ID=CX288558; Name=CX288558; organism=Citrus clementina; type=EST; length=602bp
GTCACTGGTGCGAGCCGTAATGTACATGGTGGCTCAGTGTTTGGGAGCCA
TATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTCTTACTACACAAGA
TACGGCGGTGGAGCCAATGAGCTCGCTGATGGGTACAGCACTGGCACTGG
ATTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTTTTCT
CCGCCACCGATCCCAAGAGAAATGCTAGGGACTCCCATGTTCCTGTCTTG
GCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCGACAAT
CCCAGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTGGGAGCTGCAG
TGATTTACAAGAAGGACAAGGCTTGGGATGATCAATGGATCTTCTGGGTT
GGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACCAATTCATCCT
CAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGCTCCTCCAACA
TTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAATGGCTGTCAA
GCGCCTTCGCGACTATGGAATTTGTACATTATTTTATTTGCATCAGTATT
TA
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