CX288558

Overview
NameCX288558
Unique NameCX288558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11470 contig Ccv1_Contig11470:404..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.095e-71
Identity = 130/164 (79.27%), Postives = 142/164 (86.59%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSS 493
            S++RAVMY+VAQCLG I G G+VK   K  Y   GGGAN +A GYSTGT LGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS+GAAVIY + KAWDD WIFW GPFIGA  AA YHQ+ILRA+A KALGSF+S+
Sbjct:  116 SVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGSFRSN 279          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.867e-71
Identity = 125/164 (76.22%), Postives = 144/164 (87.80%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSS 493
            SL+RA++YM+AQC GAICG GLVKAF K  Y ++GGGAN +A GY+ GT  GAE+IGTFVLVYTVFSATDPKR+ARDSHVP+LAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIY K + WDD WIFWVGPF+GA  AA YHQ++LRA+A KALGSF+S+
Sbjct:  116 SLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALGSFRSN 279          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.644e-67
Identity = 119/157 (75.80%), Postives = 135/157 (85.99%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RAV YM+ QCLGAICG G+VK FQ + Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY KD +WDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  129 SLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.644e-67
Identity = 120/157 (76.43%), Postives = 135/157 (85.99%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RAV Y+V QCLGAICG G+VK FQ + Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY KD AWDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  128 SLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKS 284          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.060e-66
Identity = 118/157 (75.16%), Postives = 133/157 (84.71%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ YMV QCLGAICG G+VK FQK  Y   GGGAN +A GY+ G GLGAEI+GTF+LVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY +  AWDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  130 SLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKS 286          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.385e-66
Identity = 118/157 (75.16%), Postives = 134/157 (85.35%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ Y+V QCLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY KD AWDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  129 SLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.385e-66
Identity = 118/157 (75.16%), Postives = 133/157 (84.71%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RAV Y+V QCLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+I+ KD AWDD W+FWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  128 SLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKS 284          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.385e-66
Identity = 117/157 (74.52%), Postives = 134/157 (85.35%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ Y+V QCLGAICG G+VK FQ+  Y   GGGAN +A GY+ G GLGAEI+GTF+LVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY KD AW+D WIFWVGPF+GAA+AA YHQ I+RA   K+
Sbjct:  131 SLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKS 287          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.261e-66
Identity = 116/157 (73.89%), Postives = 133/157 (84.71%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ Y++ QCLGAICG G+VK FQ+  Y   GGGAN +A GY+ G GLGAEI+GTF+LVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY +D AW D WIFWVGPFIGAA+AA YHQ I+RA   K+
Sbjct:  134 SLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 290          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.261e-66
Identity = 117/157 (74.52%), Postives = 133/157 (84.71%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ Y+V QCLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY KD +WDD W+FWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  128 SLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
The following BLAST results are available for this feature:
BLAST of CX288558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
PIP26_ORYSJ1.095e-7179.27Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA1.867e-7176.22Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP14_ARATH3.644e-6775.80Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH3.644e-6776.43Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_ORYSJ1.060e-6675.16Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH1.385e-6675.16Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP12_ARATH1.385e-6675.16Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ1.385e-6674.52Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_MAIZE5.261e-6673.89Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_VICFA5.261e-6674.52Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02001G05SK IF1 Citrus clementina cDNA clone C02001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288558 ID=CX288558; Name=CX288558; organism=Citrus clementina; type=EST; length=602bp
GTCACTGGTGCGAGCCGTAATGTACATGGTGGCTCAGTGTTTGGGAGCCA
TATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTCTTACTACACAAGA
TACGGCGGTGGAGCCAATGAGCTCGCTGATGGGTACAGCACTGGCACTGG
ATTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTTTTCT
CCGCCACCGATCCCAAGAGAAATGCTAGGGACTCCCATGTTCCTGTCTTG
GCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCGACAAT
CCCAGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTGGGAGCTGCAG
TGATTTACAAGAAGGACAAGGCTTGGGATGATCAATGGATCTTCTGGGTT
GGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACCAATTCATCCT
CAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGCTCCTCCAACA
TTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAATGGCTGTCAA
GCGCCTTCGCGACTATGGAATTTGTACATTATTTTATTTGCATCAGTATT
TA
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