CX288558

Overview
NameCX288558
Unique NameCX288558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11470 contig Ccv1_Contig11470:404..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.261e-66
Identity = 117/157 (74.52%), Postives = 133/157 (84.71%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ Y+V QCLGAICG G+VK FQ   Y   GGGAN +A GY+ G+GLGAEIIGTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY KD +WDD W+FWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  128 SLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 8.975e-66
Identity = 115/157 (73.25%), Postives = 134/157 (85.35%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ Y++ QCLGA+CG G+VK FQ+  Y   GGGAN +A GY+ G GLGAEI+GTF+LVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY +D AW+D WIFWVGPFIGAA+AA YHQ I+RA   K+
Sbjct:  131 SLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 287          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.296e-64
Identity = 117/152 (76.97%), Postives = 128/152 (84.21%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRA 457
            SL RAV YMV QCLGAICG G+VK F    Y R GGGAN +  GY+ G GLGAEIIGTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY  + AW+D WIFWVGP IGAA+AA YHQ I+RA
Sbjct:  129 SLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 3.771e-64
Identity = 116/165 (70.30%), Postives = 134/165 (81.21%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 496
            SLVR V+Y+VAQCLGAI G G+VK   K  Y   GGGAN ++DGYS    LGAEI+GTF+LVYTVFSATDPKR ARDS +PVL PLPIGFAVF+VHLATIP+TGTGINPARSLGAAV+Y +  AW D WIFWVGP IGA +AA YH+ +LR  A+KAL SF+S+S
Sbjct:  123 SLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKALSSFRSTS 287          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 8.400e-64
Identity = 114/157 (72.61%), Postives = 131/157 (83.44%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ YMV QCLGAICG G+VK FQ+  Y   GGGAN +  GY+ G GLGAEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA++Y +  AW+D WIFWVGPFIGAA+AA YH  I+RA   K+
Sbjct:  130 SLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKS 286          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 8.400e-64
Identity = 114/157 (72.61%), Postives = 129/157 (82.17%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RAV YM  QCLGAICG G+VK FQ+  Y   GGGAN +  GY+ G GLGAEI+GTFVLVYTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA++Y +  AW D WIFWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  130 SLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKS 286          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.288e-61
Identity = 111/157 (70.70%), Postives = 126/157 (80.25%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RAV Y+V QCLGA+CG G+VKAF  + Y   GGGAN ++ GY+ G GLGAE++GTFVLVYTVFSATD KR ARDSHVP LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY     W   WIFWVGPF GAA+AA YHQ +LRA   K+
Sbjct:  136 SLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFKS 292          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.902e-61
Identity = 112/157 (71.34%), Postives = 128/157 (81.53%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RAV Y++ QCLGAICG G+VK FQ+  Y   GG  N +A GY+ G GLGAEI+GTF+LVYTVFSATD KR ARDSHVP+LAPLPIGFAVF+VHLAT+ +TGTGINPARSLGAAVIY +  AW D WIFWVGPFIGAA+AA YHQ I+RA   K+
Sbjct:  129 SLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 285          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 1.937e-60
Identity = 110/158 (69.62%), Postives = 130/158 (82.28%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQ-KSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL RA+ YMV Q LGAICG G+VK F+ K  +    GGAN +A GY+ G GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+++ K   W+D WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  131 SLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 288          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.175e-57
Identity = 110/163 (67.48%), Postives = 126/163 (77.30%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKS-YYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVI--YKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGS 481
            SL RA +Y +AQC+GA+CG GL +A      Y R+GGGANELA GYS G G+ AE++GTFVLVYTVFSATDPKR ARDSHVPVLAPLPIG AV +VHLATIP+TGTGINPARSLG A++      KAW   WIFWVGPF GAA A  YH +ILR +A+KA  S
Sbjct:  110 SLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFAS 272          
The following BLAST results are available for this feature:
BLAST of CX288558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
PIP11_ARATH5.261e-6674.52Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_MAIZE8.975e-6673.25Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP1_SOLLC1.296e-6476.97Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP27_ORYSJ3.771e-6470.30Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE8.400e-6472.61Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ8.400e-6472.61Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE2.288e-6170.70Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP11_MAIZE3.902e-6171.34Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP2_PEA1.937e-6069.62Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP28_ORYSJ1.175e-5767.48Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC02001G05SK IF1 Citrus clementina cDNA clone C02001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288558 ID=CX288558; Name=CX288558; organism=Citrus clementina; type=EST; length=602bp
GTCACTGGTGCGAGCCGTAATGTACATGGTGGCTCAGTGTTTGGGAGCCA
TATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTCTTACTACACAAGA
TACGGCGGTGGAGCCAATGAGCTCGCTGATGGGTACAGCACTGGCACTGG
ATTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTTTTCT
CCGCCACCGATCCCAAGAGAAATGCTAGGGACTCCCATGTTCCTGTCTTG
GCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCGACAAT
CCCAGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTGGGAGCTGCAG
TGATTTACAAGAAGGACAAGGCTTGGGATGATCAATGGATCTTCTGGGTT
GGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACCAATTCATCCT
CAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGCTCCTCCAACA
TTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAATGGCTGTCAA
GCGCCTTCGCGACTATGGAATTTGTACATTATTTTATTTGCATCAGTATT
TA
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