CX288558

Overview
NameCX288558
Unique NameCX288558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11470 contig Ccv1_Contig11470:404..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.497e-28
Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S+ RA+MY++AQC+GAI    ++     S  T    G N+LADG ++G GLG EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARS G+AVI      + + WIFWVGPFIG A+A   + FIL   +S
Sbjct:   90 SIFRALMYIIAQCVGAIVATAILSGITSSL-TGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFILAPRSS 236          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 2.553e-28
Identity = 72/155 (46.45%), Postives = 90/155 (58.06%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S++RAVMY++AQC+GAI    ++     S       G N LA G  +G GLG EIIGT  LV  V + TD +R          APL IGF+V + HL  I  TG GINPARS G+AVI      + D W+FWVGPFIG A+A   + FIL   +S
Sbjct:   92 SVLRAVMYIIAQCVGAIVATAILSGITSSLPGN-SLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFILAPRSS 238          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 73/155 (47.10%), Postives = 94/155 (60.65%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S++RA+MY++AQC+GAI    ++     S       G N LA G ++G GLG EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL  I  TG GINPARS G++VI      + D WIFWVGPFIGAA+A   + FIL   +S
Sbjct:   92 SILRAIMYIIAQCVGAIVATVILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD-RRRRRD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFILAPRSS 239          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G GLG EIIGT  LV  V + TD +R          APL IG +V + HL  I  TG GINPARS G+AV+ +    + + WIFWVGPFIG+A+A   + FIL   +S
Sbjct:   90 SILRAVMYIIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRN---FSNHWIFWVGPFIGSALAVLIYDFILAPRSS 236          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 70/155 (45.16%), Postives = 92/155 (59.35%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G GLG EIIGT  LV  V + TD +R          APL IG +V + HL  I  TG GINPARS G+AV+ +    + + WIFWVGPFIG A+A   + FIL   +S
Sbjct:   90 SILRAVMYIIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRN---FSNHWIFWVGPFIGGALAVLIYDFILAPRSS 236          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.354e-28
Identity = 71/155 (45.81%), Postives = 91/155 (58.71%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S++RA+MY++AQC+GAI    ++     S       G N LA G ++G GLG EIIGT  LV  V + TD +R           PL IGF+V + HL  I  TG GINPARS G++VI      + D WIFWVGPFIGAA+A   + FIL   +S
Sbjct:   92 SVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFILAPRSS 238          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.687e-28
Identity = 74/155 (47.74%), Postives = 93/155 (60.00%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S++RAVMY++AQC+GAI    ++     S       G NELA G ++G GLG EIIGT  LV  V + TD +R  RD  +    PL IG +V + HL  I  TG GINPARS G++VI    K   D WIFWVGPFIG A+A   + FIL   +S
Sbjct:   92 SILRAVMYIIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFK---DHWIFWVGPFIGGALAVLIYDFILAPRSS 238          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 7.427e-28
Identity = 73/155 (47.10%), Postives = 94/155 (60.65%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASAS 466
            S+ RA+MY++AQC+GAI    ++     S       G N+LADG ++G GLG EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARS G+AVI      + + WIFWVGPFIG A+A   + FIL   +S
Sbjct:   90 SIFRALMYIIAQCVGAIVATAILSGITSSLPGN-SLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFILAPRSS 236          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.023e-25
Identity = 69/166 (41.57%), Postives = 90/166 (54.22%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSSN 499
            S+++AVMY++AQCLGA+    ++             G N L+ G S G GLG EI+ TF LV  V + TD +R+     VP    L IG +V + HL  I  TG G+NPARS G+AV+ K    +   WIFWVGP IG A AA  + FIL    S      K  +N
Sbjct:   94 SILKAVMYIIAQCLGAVVATAILSGITSGLENN-SLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSVP----LAIGLSVALGHLIAIDYTGCGMNPARSFGSAVLTKN---FTYHWIFWVGPMIGGAAAAIIYDFILAPRTSDLTDRMKVWTN 251          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 59/149 (39.60%), Postives = 84/149 (56.38%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFI 448
            S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARS G AVI      W++ WI+WVGP IGA +A   ++++
Sbjct:  111 SIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 251          
The following BLAST results are available for this feature:
BLAST of CX288558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
AQP1_HUMAN1.497e-2847.74Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_PIG2.553e-2846.45Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_SHEEP4.354e-2847.10Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_RAT4.354e-2845.16Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_MOUSE4.354e-2845.16Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_BOVIN4.354e-2845.81Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_CANFA5.687e-2847.74Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_PONAB7.427e-2847.10Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQPA_RANES2.023e-2541.57Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP4_RAT7.954e-2239.60Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02001G05SK IF1 Citrus clementina cDNA clone C02001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288558 ID=CX288558; Name=CX288558; organism=Citrus clementina; type=EST; length=602bp
GTCACTGGTGCGAGCCGTAATGTACATGGTGGCTCAGTGTTTGGGAGCCA
TATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTCTTACTACACAAGA
TACGGCGGTGGAGCCAATGAGCTCGCTGATGGGTACAGCACTGGCACTGG
ATTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTTTTCT
CCGCCACCGATCCCAAGAGAAATGCTAGGGACTCCCATGTTCCTGTCTTG
GCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCGACAAT
CCCAGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTGGGAGCTGCAG
TGATTTACAAGAAGGACAAGGCTTGGGATGATCAATGGATCTTCTGGGTT
GGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACCAATTCATCCT
CAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGCTCCTCCAACA
TTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAATGGCTGTCAA
GCGCCTTCGCGACTATGGAATTTGTACATTATTTTATTTGCATCAGTATT
TA
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