CX288558

Overview
NameCX288558
Unique NameCX288558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11470 contig Ccv1_Contig11470:404..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSAT-DPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            SL+RA+ Y +AQ LGA+    L++        R  G A  LA G      +  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR  G A++  +   W   W++W+GPF+GA +A   +++++  SA  A
Sbjct:  104 SLIRALFYWLAQLLGAVVATLLLRLTTGGM--RPPGFA--LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFVGAGLAGLLYEYLVIPSADAA 250          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            SL+RA  Y+ AQ LGA+ G  ++ +       R     N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ + HL  +  TG G+NPARS   A++ +    + + W++WVGP IG  + +  + F+L
Sbjct:   80 SLLRAFCYIAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            SL+RA  Y+ AQ LGA+ G  ++ +       R     N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ + HL  +  TG G+NPARS   A++ +    + + W++WVGP IG  + +  + F+L
Sbjct:   82 SLLRAFCYIAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTR-YGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            S+ RA +Y + Q L +   C L+     SY T   G   + LA G S   G+  EII TF L++TV++   DPK+ + D   P+L     GF V    LA    +G  +NPARS G A++      W D W++WVGP IG  +A F ++ +L
Sbjct:   93 SVFRAFLYWIDQLLASSAACFLL-----SYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 472
            +++    Y +AQCLG+I  C L+            G    +A G     G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV+      +   WI+WVGP +G A+A   +  +   S + A
Sbjct:   97 TVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHG----VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAPA 243          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYH 439
            +L+    Y +AQCLG+I  C L+            G    ++ G     G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV+          WI+WVGP +G A+A   +
Sbjct:   97 TLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHG----VSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDLSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.112e-15
Identity = 50/150 (33.33%), Postives = 75/150 (50.00%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFIL 451
            SL+RA  YM AQ LGA+ G  ++ +       R     N L  G S       EI  T   V  +F+  D +RN R   V     L +GF++ + HL  +  TG G+NPARS   A++ +    + + W++WVGP IG  + +  + F+L
Sbjct:   82 SLLRAFCYMAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 58/158 (36.71%), Postives = 83/158 (52.53%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGA---NELADGYSTGTGLGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASA 463
            +++  V Y +AQ LG+   C L+K     Y T  GG A   + +A G  +  G+  EII TF LVYTV++ A DPK+ +    +  +APL IG  V    LA  P +G  +NPARS G AV       +   W++WVGP IG  +A   +  +   S+
Sbjct:   97 TVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIYGNVFMGSS 240          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGA------EIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQF 445
            S++RAV Y +AQ LG+I    +++              N    G+    G+G       E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA + G +++  +   W   WIFWVGP +GAA+AA  +++
Sbjct:   99 SVIRAVYYWIAQLLGSIVAALVLRLVTN----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGPLLGAALAALVYEY 236          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 54/154 (35.06%), Postives = 79/154 (51.30%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRAS 460
            +++  ++Y VAQ LGA   C L++     Y T           G S   G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV       +   W++WVGP +G  +A   +  +  AS
Sbjct:   97 TILTGILYWVAQLLGASVACFLLQ-----YVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLVGGGLAGLVYGDVFIAS 238          
The following BLAST results are available for this feature:
BLAST of CX288558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
TIP31_ORYSJ2.927e-1635.44Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
MIP_RAT2.927e-1633.33Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE2.927e-1633.33Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP41_ARATH3.823e-1636.84Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP22_ARATH3.823e-1634.81Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP23_ARATH8.518e-1636.05Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
MIP_CAVPO1.112e-1533.33Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP21_ARATH1.898e-1536.71Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIPA_PHAVU2.478e-1534.84Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP23_MAIZE2.478e-1535.06Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02001G05SK IF1 Citrus clementina cDNA clone C02001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288558 ID=CX288558; Name=CX288558; organism=Citrus clementina; type=EST; length=602bp
GTCACTGGTGCGAGCCGTAATGTACATGGTGGCTCAGTGTTTGGGAGCCA
TATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTCTTACTACACAAGA
TACGGCGGTGGAGCCAATGAGCTCGCTGATGGGTACAGCACTGGCACTGG
ATTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTTTTCT
CCGCCACCGATCCCAAGAGAAATGCTAGGGACTCCCATGTTCCTGTCTTG
GCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCGACAAT
CCCAGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTGGGAGCTGCAG
TGATTTACAAGAAGGACAAGGCTTGGGATGATCAATGGATCTTCTGGGTT
GGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACCAATTCATCCT
CAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGCTCCTCCAACA
TTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAATGGCTGTCAA
GCGCCTTCGCGACTATGGAATTTGTACATTATTTTATTTGCATCAGTATT
TA
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