CX288559

Overview
NameCX288559
Unique NameCX288559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_HUMAN (Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 66/188 (35.11%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   25 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENF-SYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            +S R+A+ Q+   +  + N   +   ++EAA+ GAK++ LPE F S  G K     + AE + G   Q    +A+E S++L  G   E+  D   L NT  +    G + + YRK+HLFD+D+PG  +++ES     G      D+P  R+G  +CYD+RF EL  Q+  Q   Q+L+ P AF   TG
Sbjct:    2 TSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFP--EYAEKIPGESTQKLSEVAKECSIYLIGGSIPEE--DAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAEL-AQIYAQRGCQLLVYPGAFNLTTG 184          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_RAT (Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.726e-21
Identity = 64/189 (33.86%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   25 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSL--KVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            S+ R+A+ Q+   +  + N   +  LV+EAA  GA ++ LPE F+      G +   + AE + G   +    +A+E+S++L  G   E+  DD  L NT  +    GN+   +RK+HLFD+D+PG  +++ES     G      D+P  R+G  +CYD+RF EL  Q+  +   Q+L+ P AF   TG
Sbjct:    2 STFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFN---SPYGTNYFPEYAEKIPGESTKKLSEVAKENSIYLIGGSIPEE--DDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAEL-AQIYARRGCQLLVYPGAFNMTTG 184          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_DANRE (Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 65/187 (34.76%), Postives = 97/187 (51.87%), Query Frame = 1
Query:   25 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            S  R+AV Q+      A N   +  LVKEAA  GAK++ LPE F+      G   + AE + G   Q     A++  ++L  G   E+  D   L NT  +    G +  T+RK+HLFD+D+PG   ++ES     GK +   ++P  ++G  +CYD+RF EL  Q+  +   Q+L+ P AF   TG
Sbjct:    2 SKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGT-GFFKEYAEKIPGESTQVLSETAKKCGIYLVGGSIPEE--DGGKLYNTCSVFGPDGTLLVTHRKIHLFDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAEL-AQIYAKKGCQLLVYPGAFNMTTG 184          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_MOUSE (Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 65/193 (33.68%), Postives = 100/193 (51.81%), Query Frame = 1
Query:   25 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFS------YVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            S+ R+A+ Q+   +  + N   +  LV+EAA  GA ++ LPE F+      Y  D        AE + G   Q    +A+ESS++L  G   E+  D   L NT  +    G++   +RK+HLFD+D+PG  +++ES     G      D+P  ++G  +CYD+RF EL  Q+  Q   Q+L+ P AF   TG
Sbjct:    2 STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPD-------YAEKIPGESTQKLSEVAKESSIYLIGGSIPEE--DAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAEL-AQIYAQRGCQLLVYPGAFNLTTG 184          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_BOVIN (Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 64/188 (34.04%), Postives = 99/188 (52.66%), Query Frame = 1
Query:   25 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENF-SYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            ++ R+A+ Q+   +  + N   +  L++EA+  GA+++ LPE F S  G K       AE + G   Q    +A+E SM++  G   EK  D   L NT  +    G +   +RK+HLFD+D+PG  +++ES     G      D+P  R+G  +CYD+RF EL  Q+  Q   Q+L+ P AF   TG
Sbjct:    2 ATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDY--AEKIPGDSTQKLSEVAKECSMYVIGGSIPEK--DAGKLYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAEL-AQIYAQRGCQLLVYPGAFNLTTG 184          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_PONAB (Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   25 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENF-SYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            +S R+A+ Q+   +  + N   +   ++EAA+ GAK++ LPE F S  G K     + AE + G   Q    +A+E S++L  G   E+  D   L NT  +    G + + YRK+HLFD+D+PG  +++ES     G      D+   R+G  +CYD+RF EL  Q+  Q   Q+L+ P AF   TG
Sbjct:    2 ASFRLALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFP--EYAEKIPGESTQKLSEVAKECSIYLIGGSIPEE--DAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFCTFDT-YCRVGLGICYDMRFAEL-AQIYAQRGCQLLVYPGAFNLTTG 183          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_DICDI (Nitrilase homolog 2 OS=Dictyostelium discoideum GN=nit2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.769e-19
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   10 IMAGASSV-RVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            +MA    V + A  Q+   ++   N   + + + EAA  GAKL+ LPE F+          K +ET DG  ++     A+ + ++L  G   E       + NT  + +D G +   +RK+HLFD+D+P    +KES     G     VD    ++G  +CYD+RFPEL   L  +  A+ L+ P AF  VTG
Sbjct:   45 LMADKEKVFKFAGIQLLCGDNKEENVQNAIKHIDEAAKNGAKLISLPECFNSPYSTSTFE-KYSETEDGETVKKLSEAAKRNQIFLVGGSIPEIDKATGKIYNTCFIFNDKGEVVKKHRKIHLFDIDVPNKIRFKESETLTPGDSFSVVDIGYCKIGVAICYDIRFPEL-AMLYSKMGAKFLIYPGAFNMVTG 235          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_XENTR (Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.855e-18
Identity = 60/185 (32.43%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   34 RVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENF-SYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            R+++ Q       + N   + +L+KEAA  GA+++ LPE F S  G K     + AE + G   +    +A+E  ++L  G   E+  D   L NT  +    G +   +RK+HLFD+D+PG   ++ES     G      ++P  ++G  +CYD+RF EL  QL  +   Q+L+ P AF   TG
Sbjct:    5 RLSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTKYFP--EYAEKIPGESTERLSQVAKECGIYLIGGSIPEE--DSGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFETPYCKVGVGICYDIRFAEL-AQLYSKKGCQLLVYPGAFNMTTG 184          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2_SCHPO (Probable hydrolase nit2 OS=Schizosaccharomyces pombe GN=nit2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.589e-18
Identity = 58/185 (31.35%), Postives = 99/185 (53.51%), Query Frame = 1
Query:   40 AVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLD-GPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDA-GNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIV-AVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            AVAQ+ S   +  N A    L+ +AA+ GAK +  PE   ++     +++++    D    ++     A + S+++++    E       L N+ + ++   G I S Y K HLFDV+I  G + KES+ T  G+ I+    +P+G++G  +C+D+RFPE   +LR    A ++  PSAFT+ TG
Sbjct:    5 AVAQLNSSGSILKNLAICKELISQAAAKGAKCIFFPEASDFIAHNSDEAIELTNHPDCSKFIRDVRESATKHSIFVNIC-VHEPSKVKNKLLNSSLFIEPLHGEIISRYSKAHLFDVEIKNGPTLKESNTTLRGEAILPPCKTPLGKVGSAICFDIRFPEQAIKLR-NMGAHIITYPSAFTEKTG 187          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2B_XENLA (Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 57/170 (33.53%), Postives = 87/170 (51.18%), Query Frame = 1
Query:   79 NFATSSRLVKEAASAGAKLLCLPENF-SYVGDKDGDSLKVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            N   + +L+KEAA  GA+++ LPE F S  G K     + AE + G   +    +A+E  ++L  G   E+  D     NT  +    G +   +RK+HLFD+D+PG   ++ES     G      D+P  ++G  +CYD+RF EL  Q+      Q+L+ P AF   TG
Sbjct:   20 NLNKACKLIKEAAQKGAQIVALPECFNSPYGTKYFP--EYAEKIPGESTELLSQVAKECGIYLIGGSIPEE--DSGKFYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDMRFAEL-AQIYANKGCQLLVYPGAFNMTTG 184          
The following BLAST results are available for this feature:
BLAST of CX288559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
NIT2_HUMAN2.853e-2135.11Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV... [more]
NIT2_RAT3.726e-2133.86Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE... [more]
NIT2_DANRE1.084e-2034.76Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=... [more]
NIT2_MOUSE3.154e-2033.68Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV... [more]
NIT2_BOVIN3.154e-2034.04Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1[more]
NIT2_PONAB3.487e-1934.57Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV... [more]
NIT2_DICDI7.769e-1932.12Nitrilase homolog 2 OS=Dictyostelium discoideum GN... [more]
NIT2_XENTR3.855e-1832.43Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 P... [more]
NIT2_SCHPO8.589e-1831.35Probable hydrolase nit2 OS=Schizosaccharomyces pom... [more]
NIT2B_XENLA1.913e-1733.53Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE... [more]

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Properties
Property NameValue
Genbank descriptionC02001G06SK IF1 Citrus clementina cDNA clone C02001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288559 ID=CX288559; Name=CX288559; organism=Citrus clementina; type=EST; length=586bp
GACTCAGTCATCATGGCAGGCGCTAGCTCAGTCCGAGTCGCCGTTGCTCA
GATGACGTCGATCAACGACCTCGCCGCCAATTTCGCTACCTCCTCTCGCC
TCGTCAAAGAAGCAGCTTCTGCTGGGGCAAAACTGCTGTGCCTTCCCGAA
AATTTCTCTTACGTCGGTGACAAGGATGGGGACAGTCTTAAAGTTGCCGA
AACTTTAGATGGGCCAATAATGCAAGGATACTGCTCTCTAGCTAGAGAGT
CCAGCATGTGGCTGTCTCTTGGTGGCTTCCAAGAAAAGGGATCTGATGAT
GCACACTTGTGTAACACACATGTTCTGGTAGATGACGCTGGGAACATTAG
AAGCACTTATAGGAAAATGCACTTGTTTGATGTGGACATTCCTGGTGGAA
GGTCATACAAGGAAAGTAGTTTTACGGAGGCAGGAAAGGATATTGTTGCA
GTAGACAGCCCCGTTGGACGTTTGGGTCCAACAGTTTGCTATGATCTGAG
ATTTCCAGAACTTTATCAGCAACTTAGGTTCCAACATGAAGCTCAGGTTC
TATTGGTGCCTTCAGCTTTCACAAAAGTAACTGGTC
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