CX288559

Overview
NameCX288559
Unique NameCX288559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT3_YEAST (Probable hydrolase NIT3 OS=Saccharomyces cerevisiae GN=NIT3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 61/195 (31.28%), Postives = 98/195 (50.26%), Query Frame = 1
Query:   22 ASSVRVAVAQMT-SINDLAANFATSSRLVKEAASA--GAKLLCLPENFSYVGDKDGDSLKVAETLD----GPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            +  ++VA+ Q++ S  D  AN   ++  ++ A       KL+ LPE F+     D    K +E ++       +Q   +LA +  + L  G   E       + NT ++ ++ G +   +RK+HLFDVDIP G S+ ES     G+    +D+  G+ G  +CYD+RFPEL   L  +  A  ++ PSAF  VTG
Sbjct:    8 SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD-QFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPEL-AMLSARKGAFAMIYPSAFNTVTG 200          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: NIT2A_XENLA (Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 56/171 (32.75%), Postives = 88/171 (51.46%), Query Frame = 1
Query:   79 NFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSL--KVAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTG 585
            N   + +L+KEAA  GA+++ LPE F+      G +   + AE + G   +    +A+E  ++L  G   E+  D   L NT  +    G +   +RK+HLFD+D+PG   ++ES     G      D+P  ++G  +CYD+RF EL  Q+      Q+L+ P AF   TG
Sbjct:   20 NLNRACKLIKEAAQKGAQIVALPECFN---SPYGTTYFPEYAEKIPGESTELLSQVAKECGIYLIGGSIPEE--DCGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDIRFAEL-AQIYANKGCQLLVYPGAFNMTTG 184          
BLAST of CX288559 vs. ExPASy Swiss-Prot
Match: Y480_MYCTU (UPF0012 hydrolase Rv0480c/MT0498 OS=Mycobacterium tuberculosis GN=Rv0480c PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.189e-13
Identity = 61/179 (34.08%), Postives = 90/179 (50.28%), Query Frame = 1
Query:   31 VRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLK-VAETLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAHLCNTHVLVDDA--GNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLV 558
            +R+A+AQ+ S  D AAN     +   EAA+AGA+L+  PE       + G  L+ VAE +DGP   G   +A E+ + +  G F   G  D  + NT +           + Y K+HL+D        + ES     G++ V V     R+G TVCYD+RFP LY +L  +  AQ++ V
Sbjct:   61 MRIALAQIRSGTDPAANLQLVGKYAGEAATAGAQLVVFPEATMC---RLGVPLRQVAEPVDGPWANGVRRIATEAGITVIAGMFTPTG--DGRVTNTLIAAGPGTPNQPDAHYHKIHLYDAF-----GFTESRTVAPGREPVVVVVDGVRVGLTVCYDIRFPALYTELA-RRGAQLIAV 228          
The following BLAST results are available for this feature:
BLAST of CX288559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
NIT3_YEAST3.264e-1731.28Probable hydrolase NIT3 OS=Saccharomyces cerevisia... [more]
NIT2A_XENLA3.264e-1732.75Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE... [more]
Y480_MYCTU2.189e-1334.08UPF0012 hydrolase Rv0480c/MT0498 OS=Mycobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC02001G06SK IF1 Citrus clementina cDNA clone C02001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288559 ID=CX288559; Name=CX288559; organism=Citrus clementina; type=EST; length=586bp
GACTCAGTCATCATGGCAGGCGCTAGCTCAGTCCGAGTCGCCGTTGCTCA
GATGACGTCGATCAACGACCTCGCCGCCAATTTCGCTACCTCCTCTCGCC
TCGTCAAAGAAGCAGCTTCTGCTGGGGCAAAACTGCTGTGCCTTCCCGAA
AATTTCTCTTACGTCGGTGACAAGGATGGGGACAGTCTTAAAGTTGCCGA
AACTTTAGATGGGCCAATAATGCAAGGATACTGCTCTCTAGCTAGAGAGT
CCAGCATGTGGCTGTCTCTTGGTGGCTTCCAAGAAAAGGGATCTGATGAT
GCACACTTGTGTAACACACATGTTCTGGTAGATGACGCTGGGAACATTAG
AAGCACTTATAGGAAAATGCACTTGTTTGATGTGGACATTCCTGGTGGAA
GGTCATACAAGGAAAGTAGTTTTACGGAGGCAGGAAAGGATATTGTTGCA
GTAGACAGCCCCGTTGGACGTTTGGGTCCAACAGTTTGCTATGATCTGAG
ATTTCCAGAACTTTATCAGCAACTTAGGTTCCAACATGAAGCTCAGGTTC
TATTGGTGCCTTCAGCTTTCACAAAAGTAACTGGTC
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