CX288560

Overview
NameCX288560
Unique NameCX288560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 6.471e-42
Identity = 77/95 (81.05%), Postives = 86/95 (90.53%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
            YTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS+GAA+IYN+ +AWDDHWIFWAGPFIGA  AA YHQ ++RA   K+
Sbjct:  178 YTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKA 272          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.471e-42
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
            YTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA++YNKD+ WDDHWIFW GP +GAA+AA YHQ ++RA   K+
Sbjct:  190 YTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKA 284          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.452e-42
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
            YTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK + WDDHWIFW GPFIGAA+AA YHQ V+RA   KS
Sbjct:  183 YTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKS 277          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.104e-41
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRA 271
            YTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA++YN  +AW D WIFW GPFIGAA+AALYHQIV+RA
Sbjct:  187 YTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRA 276          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.442e-41
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRA 271
            YTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA++YN  +AW D WIFW GPFIGAA+AALYHQIV+RA
Sbjct:  182 YTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRA 271          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.883e-41
Identity = 77/95 (81.05%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
            YTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+NK + WDDHWIFW GPFIGA +AA YHQ V+RA   KS
Sbjct:  181 YTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKS 275          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.459e-41
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRA 271
            YTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD+AWDD WIFW GP IGAA+AA YHQ V+RA
Sbjct:  187 YTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.459e-41
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRA 271
            YTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD+AWDD WIFW GP IGAA+AA YHQ V+RA
Sbjct:  188 YTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 277          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.459e-41
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRA 271
            YTVFSATD KRNARDSH+P+LAPLPIGFAVF+VHLATIPITGTGINPARSLG A+IYNKD+AWDD WIFW GP IGAA+AA YHQ V+RA
Sbjct:  187 YTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.195e-41
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRA 271
            YTVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLG A++YN ++AW D WIFW GPFIGAA+AALYHQ+++RA
Sbjct:  185 YTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRA 274          
The following BLAST results are available for this feature:
BLAST of CX288560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
PIP26_ORYSJ6.471e-4281.05Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP22_MAIZE6.471e-4278.95Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_ARATH8.452e-4282.11Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_MAIZE1.104e-4185.56Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ1.442e-4184.44Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ARATH1.883e-4181.05Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP24_MAIZE2.459e-4185.56Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE2.459e-4185.56Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_ORYSJ2.459e-4184.44Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP24_ORYSJ4.195e-4182.22Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC02001G07SK IF1 Citrus clementina cDNA clone C02001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288560 ID=CX288560; Name=CX288560; organism=Citrus clementina; type=EST; length=467bp
TTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTC
ATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTTTGGTG
CACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAG
TCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGATCATT
GGATTTTCTGGGCAGGACCATTCATTGGAGCAGCGCTTGCAGCTTTATAT
CATCAGATTGTGATCAGGGCCATCCCATTCAAGTCCAAATGATTAGTCAT
TAATTTCGATCCGTTCAATTAATAGCCATGTATGGAGTTGAATTGCCCAC
TGTCACTGGGTTTGCTTTTAATTATCTGCTGTATATGTACAACCCTTTGG
TGTTTGTGGCTCTTGAATTGTGTATGACTATACATGTTCATGGCCAATTC
CTATTATAAATAAATTA
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