CX288560

Overview
NameCX288560
Unique NameCX288560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 8.807e-15
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   17 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            AT  +R  RD  +    PL IGF+V L HL  I  TG GINPARS G+++I +  Q   DHWIFW GPFIGAALA L +  ++
Sbjct:  157 ATTDRRRRRD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQ---DHWIFWVGPFIGAALAVLIYDFIL 234          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.150e-14
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R          APL IGF+V L HL  I  TG GINPARS G+A+I +  Q   DHW+FW GPFIG ALA L +  ++
Sbjct:  155 VLATTDRRRRDLGGS----APLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHNFQ---DHWVFWVGPFIGGALAVLIYDFIL 233          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R           PL IGF+V L HL  I  TG GINPARS G+++I +  Q   DHWIFW GPFIGAALA L +  ++
Sbjct:  155 VLATTDRRRRDLGGS----GPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQ---DHWIFWVGPFIGAALAVLIYDFIL 233          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.347e-14
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            VF++ D + + R    P  A LP+GF++ L HL  IP TG G+NPARS   A+I    + + +HW+FWAGP +GAALAAL +++ +
Sbjct:  145 VFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVI---TRNFTNHWVFWAGPLLGAALAALLYELAL 223          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.169e-13
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R          APL IG +V L HL  I  TG GINPARS G+A+I +    + +HWIFW GPFIG ALA L +  ++
Sbjct:  153 VLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.169e-13
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R          APL IG +V L HL  I  TG GINPARS G+A+I +    + +HWIFW GPFIG ALA L +  ++
Sbjct:  153 VLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 3.700e-13
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R          APL IG +V L HL  I  TG GINPARS G+A++    + + +HWIFW GPFIG+ALA L +  ++
Sbjct:  153 VLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGSALAVLIYDFIL 231          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 289
            +T+F++ D+KR      +     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+W GP IGA LA  LY  +    + FK +
Sbjct:  172 FTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYVFCPDVEFKRR 261          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R          APL IG +V L HL  I  TG GINPARS G+A++    + + +HWIFW GPFIG ALA L +  ++
Sbjct:  153 VLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R           PL IG +V L HL  I  TG GINPARS G+++I +    + DHWIFW GPFIG ALA L +  ++
Sbjct:  155 VLATTDRRRRDLGGS----GPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHN---FKDHWIFWVGPFIGGALAVLIYDFIL 233          
The following BLAST results are available for this feature:
BLAST of CX288560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
AQP1_SHEEP8.807e-1551.81Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_PIG1.150e-1448.84Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN1.962e-1448.84Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
MIP_CHICK3.347e-1445.35Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP1_PONAB2.169e-1346.51Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN2.169e-1346.51Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_RAT3.700e-1345.35Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP4_HUMAN4.833e-1340.21Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP1_MOUSE4.833e-1345.35Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_CANFA4.833e-1345.35Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC02001G07SK IF1 Citrus clementina cDNA clone C02001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288560 ID=CX288560; Name=CX288560; organism=Citrus clementina; type=EST; length=467bp
TTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTC
ATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTTTGGTG
CACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAG
TCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGATCATT
GGATTTTCTGGGCAGGACCATTCATTGGAGCAGCGCTTGCAGCTTTATAT
CATCAGATTGTGATCAGGGCCATCCCATTCAAGTCCAAATGATTAGTCAT
TAATTTCGATCCGTTCAATTAATAGCCATGTATGGAGTTGAATTGCCCAC
TGTCACTGGGTTTGCTTTTAATTATCTGCTGTATATGTACAACCCTTTGG
TGTTTGTGGCTCTTGAATTGTGTATGACTATACATGTTCATGGCCAATTC
CTATTATAAATAAATTA
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