CX288560

Overview
NameCX288560
Unique NameCX288560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.312e-13
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 289
            +T+F++ D+KR      V     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+W GP IGA LA ALY  +    +  K +
Sbjct:  172 FTIFASCDSKRTDVTGSVA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRR 261          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 289
            +T+F++ D+KR      +     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+W GP IGA LA ALY  +    +  K +
Sbjct:  175 FTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRR 264          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            +F +TD +R  +  H      L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW GP +GA +A+L +  V+
Sbjct:  145 IFPSTDKRRGKQLGH----PALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.406e-12
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 2
Query:   65 APLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIR 268
            APL +G ++   HL  I +TG  +NPARS G A++ N    W DHW++W GP +GA +AAL ++ V +
Sbjct:  174 APLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNM---WIDHWVYWVGPIVGAIVAALLYKFVFK 238          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.836e-12
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   65 APLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRA 271
            AP+ +G A+   HLA I  TG+ +NPARS G A+  N D  W +HW++WAGP +G  +A + ++ + RA
Sbjct:  177 APVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVYWAGPIVGGVVAGITYRALFRA 243          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 289
            +T+F++ D+KR      +     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+W GP IGA LA  LY  +    +  K +
Sbjct:  172 FTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYVFCPDVELKRR 261          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            +F++TD +R       P    L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW GP +GA L +L +  V+
Sbjct:  145 IFASTDERRGEN----PGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAILGSLLYNYVL 223          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.091e-12
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 2
Query:    2 YTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            Y V+S A D KR +    + I+APL IG  V    L   P  G  +NPAR+ G AL+      W +HWI+W GPFIG ALAAL ++ +I
Sbjct:  165 YVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALV---GWRWSNHWIYWVGPFIGGALAALIYEYMI 246          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.091e-12
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 YTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            Y V+S   D KR +    + I+APL IG  V    L   P +G  +NPAR+ G AL+      W DHWI+W GPFIG+ALAAL ++ ++
Sbjct:  165 YVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALV---GWRWHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 289
            +T+F++ D+KR      +     L IGF+V + HL  I  TG  +NPARS G A+I      W +HWI+W GP +GA LA ALY  +    +  K +
Sbjct:  172 FTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWIYWVGPIMGAVLAGALYEYVFCPDVELKRR 261          
The following BLAST results are available for this feature:
BLAST of CX288560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
AQP4_RAT6.312e-1341.24Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL8.243e-1340.21Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP2_SHEEP1.077e-1243.02Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQP_HAEIX1.406e-1244.12Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP_CICVR1.836e-1243.48Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP4_DIPME2.398e-1239.18Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP2_HUMAN2.398e-1243.02Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
TIP32_ARATH4.091e-1244.94Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ARATH4.091e-1243.82Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
AQP4_MOUSE5.343e-1239.18Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02001G07SK IF1 Citrus clementina cDNA clone C02001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288560 ID=CX288560; Name=CX288560; organism=Citrus clementina; type=EST; length=467bp
TTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTC
ATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTTTGGTG
CACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAG
TCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGATCATT
GGATTTTCTGGGCAGGACCATTCATTGGAGCAGCGCTTGCAGCTTTATAT
CATCAGATTGTGATCAGGGCCATCCCATTCAAGTCCAAATGATTAGTCAT
TAATTTCGATCCGTTCAATTAATAGCCATGTATGGAGTTGAATTGCCCAC
TGTCACTGGGTTTGCTTTTAATTATCTGCTGTATATGTACAACCCTTTGG
TGTTTGTGGCTCTTGAATTGTGTATGACTATACATGTTCATGGCCAATTC
CTATTATAAATAAATTA
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