CX288560

Overview
NameCX288560
Unique NameCX288560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 253
            +FS+TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N+      HW+FW GP +GAA+AA+ +
Sbjct:  146 IFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAAVAAILY 221          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 253
            +FS+TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N+      HW+FW GP +GA LAA+ +
Sbjct:  146 IFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAVLAAILY 221          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            +F++TD +R            L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW GP +GA +A+L +  V+
Sbjct:  145 IFASTDERRGDNVG----TPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.190e-11
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 253
            +FS+TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N+      HW+FW GP +GA LAA+ +
Sbjct:  146 IFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAMLAAILY 221          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.190e-11
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 289
            +T+F++ D+KR      +     L IG +V + HL  I  TG  +NPARS G A+I      W++HWI+W GP IGA LA  LY  +    +  K +
Sbjct:  172 FTIFASCDSKRTDVTGSIA----LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYVFCPDVELKRR 261          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.555e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 YTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 262
            YTV++ A D K+      + ++AP+ IGF V    LA     G  +NPA S G A++      WD+HW++W GPF+GAA+AAL + I+
Sbjct:  157 YTVYATAVDPKKG----DLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWDNHWVYWLGPFVGAAIAALIYDII 237          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.555e-11
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 262
            + +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NPARS G AL      A +  W+FW  P  GA + AL +++V
Sbjct:  150 FVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG-GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.555e-11
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 2
Query:    2 YTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 262
            + +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NPARS G AL      A +  W+FW  P  GA + AL +++V
Sbjct:  150 FVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG-GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.555e-11
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   47 SHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 262
            S VP+  AP+ IG  + L+HL +IP+T T +NPARS G AL    D A    W+FW  P IGA +A +  +IV
Sbjct:  153 SRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQALFVG-DWAISQLWLFWVAPLIGAVIAGIVWKIV 224          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2
Query:   65 APLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 253
            AP+ IG ++ L+HL +IP+T T +NPARS G AL    D A  + W+FW  P +GAALA L++
Sbjct:  163 APIAIGLSLTLIHLISIPVTNTSVNPARSTGPALFVG-DWAIAELWLFWLAPIVGAALAGLFY 224          
The following BLAST results are available for this feature:
BLAST of CX288560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
AQP5_PIG6.979e-1243.37Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP5_MOUSE9.114e-1243.37Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP2_BOVIN9.114e-1241.86Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
AQP5_RAT1.190e-1143.37Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP4_BOVIN1.190e-1138.14Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP12_ORYSJ1.555e-1140.91Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQPZ_BORPA1.555e-1140.23Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR1.555e-1140.23Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQPZ1_RHIME1.555e-1146.58Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
AQPZ_GLOVI2.030e-1149.21Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC02001G07SK IF1 Citrus clementina cDNA clone C02001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288560 ID=CX288560; Name=CX288560; organism=Citrus clementina; type=EST; length=467bp
TTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTC
ATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTTTGGTG
CACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAG
TCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGATCATT
GGATTTTCTGGGCAGGACCATTCATTGGAGCAGCGCTTGCAGCTTTATAT
CATCAGATTGTGATCAGGGCCATCCCATTCAAGTCCAAATGATTAGTCAT
TAATTTCGATCCGTTCAATTAATAGCCATGTATGGAGTTGAATTGCCCAC
TGTCACTGGGTTTGCTTTTAATTATCTGCTGTATATGTACAACCCTTTGG
TGTTTGTGGCTCTTGAATTGTGTATGACTATACATGTTCATGGCCAATTC
CTATTATAAATAAATTA
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