CX288560

Overview
NameCX288560
Unique NameCX288560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 253
            VFS+TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A+I ++  +   HW+FW GP +GAA AA+ +
Sbjct:  146 VFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSS--AHWVFWVGPIVGAATAAIIY 221          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   50 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            HV  +APL +GF +    LA  P  G G+NPAR  G AL+      W  HW++W GPF+GA LA L ++ ++
Sbjct:  175 HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYLV 243          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 253
            +F++TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N+      HW+FW GP +GA LAA+ +
Sbjct:  146 IFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILY 221          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            V + TD +R+     VP    L IG +V L HL  I  TG G+NPARS G+A++    + +  HWIFW GP IG A AA+ +  ++
Sbjct:  157 VVAVTDRRRHDVSGSVP----LAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    8 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            +F++TD +R+           L IGF+V L HL  I  TG  +NPARSL  A++  K   +DDHW+FW GP +GA + +L +  ++
Sbjct:  145 IFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   50 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 265
            HV  +APL +GF +    LA  P  G G+NPAR  G AL+      W  HW++W GPF+GA LA L ++ ++
Sbjct:  174 HVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLV 242          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 2
Query:   38 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 262
            A D   P   AP+ IG  + L+HL +IP+T T +NPARS G AL Y  D A    W+FW  P +GA L A+ ++++
Sbjct:  151 ATDQRAPQGFAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVAL-YVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 2
Query:   38 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 262
            A D   P   AP+ IG  + L+HL +IP+T T +NPARS G AL Y  D A    W+FW  P +GA L A+ ++++
Sbjct:  151 ATDQRAPQGFAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVAL-YVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   62 LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA 241
            +A LPIG ++F+ H+A    TGTG+NPARSLGAA+       +  HWI+W GP +GA LA
Sbjct:  204 MAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGAFLA 261          
BLAST of CX288560 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 2
Query:   38 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 262
            A D   P   APL IG A+ L+HL +IP+T T +NPARS G AL      A    W+FW  P IGA L A  ++++
Sbjct:  150 ATDKRAPAGFAPLAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWAVQQLWLFWLAPIIGAVLGAKVYRLI 224          
The following BLAST results are available for this feature:
BLAST of CX288560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
AQP5_SHEEP2.652e-1144.58Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
TIP31_ORYSJ3.463e-1143.06Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
AQP5_HUMAN3.463e-1142.17Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQPA_RANES4.523e-1141.86Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP2_MOUSE4.523e-1139.53Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP31_MAIZE5.908e-1143.06Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQPZ_VIBVY5.908e-1143.42Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]
AQPZ_VIBVU5.908e-1143.42Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
AQY2_YEAST7.716e-1151.67Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]
AQPZ_CHRVO7.716e-1144.74Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]

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Properties
Property NameValue
Genbank descriptionC02001G07SK IF1 Citrus clementina cDNA clone C02001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288560 ID=CX288560; Name=CX288560; organism=Citrus clementina; type=EST; length=467bp
TTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTC
ATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTTTGGTG
CACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAG
TCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGATCATT
GGATTTTCTGGGCAGGACCATTCATTGGAGCAGCGCTTGCAGCTTTATAT
CATCAGATTGTGATCAGGGCCATCCCATTCAAGTCCAAATGATTAGTCAT
TAATTTCGATCCGTTCAATTAATAGCCATGTATGGAGTTGAATTGCCCAC
TGTCACTGGGTTTGCTTTTAATTATCTGCTGTATATGTACAACCCTTTGG
TGTTTGTGGCTCTTGAATTGTGTATGACTATACATGTTCATGGCCAATTC
CTATTATAAATAAATTA
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