CX288562

Overview
NameCX288562
Unique NameCX288562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15378 contig Ccv1_Contig15378:139..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 82/195 (42.05%), Postives = 117/195 (60.00%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+ +LE MA+HG   L++SS+   YG P+++P TEE P + +NPYG+ K   E+I  D +  + +  +++LRYFN +G+ P G +GE PR        +       A G    L V G DY+T DGT VRDYI V DL D H+ AL + +  K+G  +YN+GTG G SV E V+A +KA+   I ++   RRPGD
Sbjct:  110 TITLLEVMAQHGCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFNPVGAHPSGDIGEDPR---GIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGD 301          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.289e-36
Identity = 82/195 (42.05%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+V+ E MA HG   L++SS+   YG P+++P TEE P +  NPYG+ K + E+I  D +    +  +++LRYFN +G+ P G +GE PR        +       A G    L V G DY+T+DGT VRDYI V DL D H+ AL +    K+G  +YN+GTGKG SV E V+A ++A+   I ++   RRPGD
Sbjct:  110 TIVLFEVMAAHGCKKLVFSSSATVYGLPKEVPCTEEFPLSAANPYGRTKLIIEEICRDIYRAEQEWKIILLRYFNPVGAHPSGYIGEDPR---GIPNNLMPFVQQVAVGRRPALTVFGNDYTTSDGTGVRDYIHVVDLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVMAGRRPGD 301          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.784e-35
Identity = 82/195 (42.05%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+ +LE MA++G   L++SS+   YG P+++P TEE+P +  NPYG+ K   E+I  D  + +S+  +++LRYFN +G+ P G +GE P   L     +       A G    L V GTDY T DGT VRDYI V DL D H+ AL +    K+   +YN+GTG G SV E V A +KA+   I ++   RRPGD
Sbjct:  109 TVTLLEVMAQYGCKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGYIGEDP---LGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGD 300          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.382e-34
Identity = 82/201 (40.80%), Postives = 113/201 (56.22%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  + T ++ E+M ++GV  +++SS+   YG PE  PITE+ P    NPYG+ K M E I+ D  + +++ +V +LRYFN  G+ P GR+GE P         +       A G +  L V G DY T DGT VRDYI V DL + HVKALE+         YN+GTG G SV E V+A +K +   +   +  RRPGD A
Sbjct:   99 NNLTGTFILCEAMEKYGVKKIVFSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPFGAHPSGRIGEDPN---GIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIA 296          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_LACCA (UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.251e-34
Identity = 80/198 (40.40%), Postives = 109/198 (55.05%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N T   + +LE+M + G+  +++SST ATYGEP+++PI E  PQ P NPYG++K   E I+        +  + LRYFNV G+ P+G +GE   PE      I       A G   GL++ G DY T DGT VRDY+ V DL DAH+ AL+      K   +N+G+  G S  E + A +K T   I     PRR GD
Sbjct:   92 NNTGGMITLLEAMNQFGIKKIVFSSTAATYGEPKQVPIKETDPQVPTNPYGESKLAMEKIMHWADVAYGLKFVALRYFNVAGAMPDGSIGEDHHPET----HIVPIILQVAAGTRTGLQIYGDDYPTKDGTNVRDYVHVVDLADAHILALKYLDAGNKSSAFNIGSAHGFSNLEILNAARKVTGQEIPATMGPRRAGD 285          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.251e-34
Identity = 80/200 (40.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N    T  +L+ M  H V  +++SST ATYGEP ++PI E  P  P NPYG+ K   E +     +   +  + LRYFN  G+DP GR+GE   PE      +       A G    + + G DY T DG+C+RDYI V DL +AH  A E  +   + G +N+G GKG SVKE +E C++ T   I     PRR GD A
Sbjct:   91 NNVIGTHTLLKKMLEHDVKKIVFSSTAATYGEPVQIPIQESDPTIPTNPYGETKLAIEKMFHWCQEAYGLQYVCLRYFNAAGADPNGRIGEDHSPE----SHLIPIVLQVALGQRERVAIFGDDYQTEDGSCIRDYIHVMDLANAHYLACEHLRKDGQSGSFNLGNGKGFSVKEVIEVCRQVTGHPIPAEIAPRRSGDPA 286          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.582e-33
Identity = 81/201 (40.30%), Postives = 112/201 (55.72%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAG---LKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N  +  + +L++M    V  L++SS+ ATYG P+K+PITE+TP  PINPYG+ K M E I+    K   +    LRYFNV G+  +G +GE   PE      I        +  I+G     + G DY T DGT VRDY+ V DL+DAH+ AL+   +  K  ++N+GT  G S  E +E+ KK T  +I     PRR GD
Sbjct:   92 NNVTGMISLLQAMNDANVKYLVFSSSAATYGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKADGIKYTALRYFNVAGASSDGSIGEDHAPETHLIPNI-------LKSAISGDGKFTIFGDDYDTKDGTNVRDYVQVEDLIDAHILALKHMMKTNKSDVFNLGTAHGYSNLEILESAKKVTGIDIPYTMGPRRGGD 285          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_CORGL (UDP-glucose 4-epimerase OS=Corynebacterium glutamicum GN=galE PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.419e-32
Identity = 81/193 (41.97%), Postives = 108/193 (55.96%), Query Frame = 1
Query:   19 LVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            L +L++M  HGV+ L++SST ATYGEP+ +PITE+ P  P N YG  K   +  I  ++    +A   LRYFNV G+   G +GE    E+  H  +       A G      + G D+ T DGT VRDYI + DL  AHV ALE  +  K  I+N+G+G G SVK+ VE C++ T   I     PRR GD A
Sbjct:   96 LTLLDAMRAHGVNNLVFSSTAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFNVAGA--YGNIGE--NREVETH--LIPLVLQVATGHREKTFMFGDDWPTPDGTAVRDYIHILDLAKAHVLALESNEAGKHRIFNLGSGDGYSVKQVVEMCREVTGHPIPAEVAPRRAGDPA 282          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.095e-31
Identity = 77/196 (39.29%), Postives = 110/196 (56.12%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+ + E MA+H    +++SS+   YG+PEK+P  E+     +NPYG+ K   E+I  D  K   +  +++LRYFN +G+   G+LGE PR        +       A G +  L V G DY T DG+ +RDYI V DL D H+ AL +    + +G   YN+GTG+G SV E V A +KA+   I +   PRRPGD
Sbjct:  113 TINLYEVMAKHNCKKMVFSSSATVYGQPEKIPCVEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWRIVLLRYFNPVGAHESGKLGEDPR---GIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHVMDLADGHIAALRKLFTSENIGCTAYNLGTGRGSSVLEMVAAFEKASGKKIALKLCPRRPGD 305          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.430e-31
Identity = 78/198 (39.39%), Postives = 111/198 (56.06%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE-RAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N T+  + +LE M+  GV  +++SST ATYG P+++PI E TPQ PINPYG++K M E I+    +   +  + LRYFNV G+ P+G +GE   PE      +       A+G+   + + G DY+T DGT VRDY+   DL DAH+ AL    Q      +N+G+  G S  + +EA +K T   I      RR GD
Sbjct:   94 NNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIPDEIPIKETTPQRPINPYGESKLMMETIMKWSDRAYGIKFVPLRYFNVAGAKPDGSIGEDHSPET----HLLPIILQVAQGVREKIMIFGDDYNTPDGTNVRDYVHPFDLADAHLLALNYLRQGNPSTAFNLGSSTGFSNLQILEAARKVTGQKIPAEKAARRSGD 287          
The following BLAST results are available for this feature:
BLAST of CX288562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE2_ARATH8.655e-3742.05UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE2_CYATE3.289e-3642.05UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE3_ARATH2.784e-3542.05UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE_BACSU1.382e-3440.80UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE_LACCA5.251e-3440.40UDP-glucose 4-epimerase OS=Lactobacillus casei GN=... [more]
GALE_BACHD5.251e-3440.00UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]
GALE_LACHE7.582e-3340.30UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
GALE_CORGL6.419e-3241.97UDP-glucose 4-epimerase OS=Corynebacterium glutami... [more]
GALE1_PEA1.095e-3139.29UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE_STRMU1.430e-3139.39UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]

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Properties
Property NameValue
Genbank descriptionC02001G09SK IF1 Citrus clementina cDNA clone C02001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288562 ID=CX288562; Name=CX288562; organism=Citrus clementina; type=EST; length=597bp
AACATTACGTCAAATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGG
CGTGGATACTTTGATATATTCCAGTACATGCGCAACATACGGAGAGCCTG
AAAAGATGCCCATTACTGAAGAAACTCCACAGGCTCCAATTAATCCATAT
GGTAAAGCTAAGAAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAA
TTCAGACATGGCAGTTATGATCCTACGGTACTTCAATGTCATCGGTTCTG
ATCCAGAGGGTAGATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCAT
GGGCGAATATCAGGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGG
GCTGAAGGTCAAAGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTC
GTGATTATATTGACGTCAATGATCTGGTTGATGCTCATGTCAAAGCTCTT
GAGAGGGCACAACCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAA
AGGGAGATCGGTAAAGGAGTTTGTTGAGGCATGTAAAAAAGCAACATCGG
CAAATATCAAAGTTATATATGAACCTCGCCGCCCAGGTGACTATGCT
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