CX288562

Overview
NameCX288562
Unique NameCX288562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.160e-31
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            TL +L++M R+ V  +++SST ATYGEPE +PITE+ P  P NPYG  K   +  I  ++     A   LRYFNV G+   G +GE    E+  H  +       A G    + + G D+ T DGT +RDYI + DL DAH+ AL+        I+N+G+G+G SVK+ ++ C++ T   I     PRR GD A
Sbjct:   95 TLALLDAMKRNNVRNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYFNVAGA--YGLVGE--NREIETH--LIPLVLQVALGHRDKIFMFGDDWPTEDGTPIRDYIHIRDLADAHILALQSNVEGSHRIFNLGSGEGYSVKQVIDTCREVTGHLIPAEVAPRRAGDPA 282          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.269e-31
Identity = 83/204 (40.69%), Postives = 115/204 (56.37%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSKNSDM-AVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGI--YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  + T V+LE+MA + V   +YSS+   YGEP+ +P+TEE P     +PYGK K   E+I+ D  K+    AV+ LRYFN +G+   GR+GE P  E      +       A G    L V G+D+ T DGT VRDYI + DL + HVKAL++ +   + G   YN+GTG G SV + V+A +KA+   +      RR GD A
Sbjct:  108 NNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHPTGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGEDPNGE---PNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAEGHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLVDRRSGDVA 308          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_DICDI (UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.211e-30
Identity = 79/202 (39.11%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  + TL +L  M +H V  L++SS+   YG+P  +PITE+ P +  NPYG+ K   E I+ D  + + +   ++LRYFN +G+ P G +GE P+        +       A G    L + G DY+T DGT VRD+I V DL   H+ AL     KK G   YN+GTG+G SV E V A K+A+   I      RR GD A
Sbjct:  104 NNIAGTLTLLNLMDKHRVKKLVFSSSATVYGDPHTVPITEDFPLSATNPYGRTKLYVEGILQDLCASDPEWNCIMLRYFNPVGAHPSGLIGEDPKD---IPNNLMPYVTQTAIGKRPILSIFGNDYNTPDGTGVRDFIHVVDLAKGHISALSSLHSKKQGCVAYNLGTGRGYSVLEMVGALKQASHKEIPYQIVSRRKGDVA 302          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.522e-30
Identity = 81/200 (40.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N  + TL ++ +M    V  LI+SS+   YG+  K+P  E  P   P +PYGK+K M E I+ D  K   + ++ +LRYFN +G+ P G +GE P+        +       A G    L V G DY T DGT VRDYI V DL D HV A+E+   K  V IYN+G G G SV + V A  KA    I   + PRR GD
Sbjct:   99 NNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGI---PNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAFSKACGKPINYHFAPRRDGD 295          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.522e-30
Identity = 81/200 (40.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N  + TL ++ +M    V  LI+SS+   YG+  K+P  E  P   P +PYGK+K M E I+ D  K   + ++ +LRYFN +G+ P G +GE P+        +       A G    L V G DY T DGT VRDYI V DL D HV A+E+   K  V IYN+G G G SV + V A  KA    I   + PRR GD
Sbjct:   99 NNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGI---PNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAFSKACGKPINYHFAPRRDGD 295          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.522e-30
Identity = 77/197 (39.09%), Postives = 111/197 (56.35%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER--AQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+ + E+MA++    +++SS+   YG+PEK+P  E+     +NPYG+ K   E+I  D  K   +  +++LRYFN +G+   G +GE P+        +       A G +  L V G DY T DG+ VRDYI V DL D H+ AL +  A P K+G   YN+GTG+G SV E V A +KA+   I +   PRR GD
Sbjct:  114 TINLYETMAKYNCKMMVFSSSATVYGQPEKIPCMEDFELKAMNPYGRTKLFLEEIARDIQKAEPEWRIILLRYFNPVGAHESGSIGEDPK---GIPNNLMPYIQQVAVGRLPELNVYGHDYPTEDGSAVRDYIHVMDLADGHIAALRKLFADP-KIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRSGD 306          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.846e-30
Identity = 79/200 (39.50%), Postives = 105/200 (52.50%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N  + TL ++ +M    V   I+SS+   YG+  K+P  E  P   P +PYGK+K M E I+ D  K   D ++ +LRYFN +G+ P G +GE P+        +       A G    L + G DY T DGT VRDYI V DL D HV A+E+ A    V IYN+G G G SV + V A  KA    +   + PRR GD
Sbjct:   99 NNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGI---PNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_PASMU (UDP-glucose 4-epimerase OS=Pasteurella multocida GN=galE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.025e-29
Identity = 80/202 (39.60%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSKNS-DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  + +LV+++ M + GV   ++SS+   YG+PE +PITE        NPYG +K M E I+ D +K + + ++ ILRYFN +G+   G +GE P         +       A G +  L V G+DY T DGT VRDYI V DL   H+KAL+R +    + IYN+GTG G SV + V+A +K     I      RRPGD A
Sbjct:   99 NNVTGSLVLIQEMKKAGVWNFVFSSSATVYGDPEIIPITESCKVGGTTNPYGTSKFMVEQILKDIAKATPEFSITILRYFNPVGAHESGLIGEDPNGI---PNNLLPYISQVAIGKLPQLSVFGSDYETHDGTGVRDYIHVVDLAIGHLKALDRHEGDAGLHIYNLGTGSGYSVLDMVKAFEKVNDIKIPYKLVDRRPGDIA 297          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.338e-29
Identity = 79/202 (39.11%), Postives = 108/202 (53.47%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP-QAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  + TLV+LE M   GV+  I+SS+   YG    +P  E TP     +PYG +K M E I+ D++K N +   + LRYFN +G+   G++GE P         +       A G +  L + G DY T DGT VRDYI V DL + H+KAL+     +    YN+G GKG SV E V+A +KA+   +     PRR GD A
Sbjct:   99 NNVTGTLVLLEEMRSAGVNQFIFSSSATVYGADAPVPYVETTPIGGTTSPYGTSKLMVEQILRDYAKANPEFKTIALRYFNPVGAHESGQMGEDPNGI---PNNLLPYIAQVAIGRLEKLGIFGDDYPTEDGTGVRDYIHVMDLAEGHLKALDHLSAIEGYKAYNLGAGKGYSVLEMVKAFEKASGGTVAYQISPRRDGDLA 297          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.283e-29
Identity = 81/202 (40.10%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  + TLV+++ M + GV   ++SS+   YG+P+ +PITE+       NPYG +K M E I+ D +K     ++ ILRYFN +G+   G +GE P         +       A G +A L V G+DY T DGT VRDYI V DL   H+KAL+R +    + IYN+GTG G SV + V+A +KA +  I      RR GD A
Sbjct:   99 NNVAGTLVLIQEMKKAGVWNFVFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQILRDTAKAEPKFSMTILRYFNPVGAHESGLIGEDPNGI---PNNLLPYISQVAIGKLAQLSVFGSDYDTHDGTGVRDYIHVVDLAVGHLKALQRHENDAGLHIYNLGTGHGYSVLDMVKAFEKANNITIAYKLVERRSGDIA 297          
The following BLAST results are available for this feature:
BLAST of CX288562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE_CORDI4.160e-3139.69UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
GALE_DROME9.269e-3140.69Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GALE_DICDI1.211e-3039.11UDP-glucose 4-epimerase OS=Dictyostelium discoideu... [more]
GALE_SALTY3.522e-3040.50UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]
GALE_SALTI3.522e-3040.50UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
GALE1_ARATH3.522e-3039.09UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE_ECOLI7.846e-3039.50UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GALE_PASMU1.025e-2939.60UDP-glucose 4-epimerase OS=Pasteurella multocida G... [more]
GALE_ERWAM1.338e-2939.11UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE_HAEIN2.283e-2940.10UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]

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Properties
Property NameValue
Genbank descriptionC02001G09SK IF1 Citrus clementina cDNA clone C02001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288562 ID=CX288562; Name=CX288562; organism=Citrus clementina; type=EST; length=597bp
AACATTACGTCAAATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGG
CGTGGATACTTTGATATATTCCAGTACATGCGCAACATACGGAGAGCCTG
AAAAGATGCCCATTACTGAAGAAACTCCACAGGCTCCAATTAATCCATAT
GGTAAAGCTAAGAAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAA
TTCAGACATGGCAGTTATGATCCTACGGTACTTCAATGTCATCGGTTCTG
ATCCAGAGGGTAGATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCAT
GGGCGAATATCAGGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGG
GCTGAAGGTCAAAGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTC
GTGATTATATTGACGTCAATGATCTGGTTGATGCTCATGTCAAAGCTCTT
GAGAGGGCACAACCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAA
AGGGAGATCGGTAAAGGAGTTTGTTGAGGCATGTAAAAAAGCAACATCGG
CAAATATCAAAGTTATATATGAACCTCGCCGCCCAGGTGACTATGCT
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