CX288562

Overview
NameCX288562
Unique NameCX288562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.894e-29
Identity = 77/202 (38.12%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE-RAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  S +LV+ E MAR GV ++++SS+   YG+P K+P TE+ P     +PYG +K M E I+ D  K +   ++++LRYFN IG+   G +GE  +P    +  +   C   A G +  L V G DY T DGT +RDYI V DL + HV A++ ++      + N+G+G+  SV E + A + A+   I    +PRR GD A
Sbjct:  100 NNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERILTDIQKADPRWSMILLRYFNPIGAHESGLIGE--QPNGIPNNLLPYIC-QVAAGKLPQLAVFGDDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRAFEAASGLTIPYEVKPRRAGDLA 298          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.086e-29
Identity = 78/199 (39.20%), Postives = 104/199 (52.26%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N    T+ +LE+M   GV  L++SST ATYGEPE++PI E  P  P NPYG +K   + +I   +    +  + + YFNV G++   RL   P   L             A+G    + V G DY T D TCVRDYI V DL +AH+ A+ R    +  I N+G G G SV+E VE  ++ T   I  I  PRR  D A
Sbjct:   95 NNVGGTMALLEAMRGAGVRRLVFSSTAATYGEPEQVPIVESAPTRPTNPYGASKLAVDHMITGEAAAHGLGAVSVPYFNVAGANRGVRLVHDPESHL------IPLVLQVAQGRREAISVYGDDYPTPD-TCVRDYIHVADLAEAHLLAVRRRPGNEHLICNLGNGNGFSVREVVETVRRVTGHPIPEIMAPRRGRDPA 286          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.086e-29
Identity = 77/202 (38.12%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE-RAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  S +LV+ E MAR GV ++++SS+   YG+P K+P TE+ P     +PYG +K M E I+ D  K +   ++++LRYFN IG+   G +GE  +P    +  +   C   A G +  L V G DY T DGT +RDYI V DL + HV A++ ++      + N+G+G+  SV E + A + A+   I    +PRR GD A
Sbjct:  100 NNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPLGDTTSPYGTSKSMVERILTDIQKADPRWSMILLRYFNPIGAHESGLIGE--QPNGIPNNLLPYIC-QVASGRLPQLSVFGGDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRAFEAASGLTIPYEVKPRRAGDLA 298          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_NEIMC (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 78/202 (38.61%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEE-TPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE-RAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  S +LV+ E MAR GV  +++SS+   YG+P K+P TE+  P    +PYG +K M E I+ D  K +   +V++LRYFN IG+   G +GE  +P    +  +   C   A G +  L V G DY T DGT +RDYI V DL + HV A++ ++      + N+G+G+  SV E + A + A+   I    +PRR GD A
Sbjct:  100 NNVSGSLVLAEEMARAGVFKIVFSSSATVYGDPGKVPYTEDMQPGDTTSPYGTSKSMVERILSDIQKADPRWSVILLRYFNPIGAHESGLIGE--QPNGIPNNLLPYIC-QVAAGKLPQLAVFGGDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRAFEAASGLTIPYEVKPRRAGDLA 298          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_NEIGO (UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 77/202 (38.12%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEET-PQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE-RAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N    +LV+ E MAR GV  +++SS+   YG+ EK+P TE+  P    NPYG +K M E ++ D  K +   +V++LRYFN IG+   G +GE P      +  +   C   A G +  L V G DY T DGT +RDYI V DL + H+ A++ +     V ++N+G+G+  SV E + A + A+  +I    +PRR GD A
Sbjct:   99 NNVYGSLVLAEEMARAGVLKIVFSSSATVYGDAEKVPYTEDMRPGDTANPYGASKAMVERMLTDIQKADPRWSVILLRYFNPIGAHESGLIGEQPNGV--PNNLLPYIC-QVASGRLPQLSVFGGDYPTPDGTGMRDYIHVMDLAEGHIAAMKAKGGVAGVHLFNLGSGRAYSVLEIIRAFEAASGLHIPYRIQPRRAGDLA 297          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP-QAPINPYGKAKKMAEDIILDFS-KNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N    ++ +LE M    V  LI+SS+   YGEPE +P+TE+       NPYG +K M E I+ DFS  + D ++  LRYFN +G+ P G +GE P  +      +       A G ++ L V G DY T DG+ +RDYI V DL + H+  L         IYN+GTG G SV   ++  ++ T  NI      RRPGD A
Sbjct:   99 NNVVGSITLLEEMCLANVKKLIFSSSATVYGEPEFVPLTEKARIGGTTNPYGTSKVMVEQILKDFSLAHPDYSITALRYFNPVGAHPSGLIGEDPNGK---PNNLLPFITQVAIGKLSKLLVYGNDYDTPDGSGIRDYIHVMDLAEGHLSTLINL-TSGFRIYNLGTGVGYSVLHMIKEFERITGKNIPFDIVSRRPGDIA 295          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 76/198 (38.38%), Postives = 109/198 (55.05%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N T+  + +LE M   GV  +++SST ATYG PE++PI E TPQ PINPYG++K M E I+    +   +  + LRYFNV G++   RL        R    +       A+G+   + + G DY+T DGT VRDY+   DL DAH+ A+E  +   +   +N+G+  G S  + +EA +K T   I      RRPGD
Sbjct:   94 NNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINPYGESKLMMETIMKWSDQAYGIKYVPLRYFNVAGANLMVRL-----VRTRSETHLLPIILQVAQGVREKIMIFGDDYNTPDGTNVRDYVHPFDLADAHLLAVEYLRKGNESTAFNLGSSTGFSNLQILEAARKVTGKEIPAEKADRRPGD 286          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.933e-28
Identity = 69/196 (35.20%), Postives = 109/196 (55.61%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+ + + M++     L+ SS+   YG+P+++P  E++    +NPYG++K   E++  D  +  ++  +++LRYFN +G+   G++GE PR        +       A   +  L + G DY T DGT +RDYI V DL D H+ AL +      +G   YN+GTG+G SV E V A +KA+   I +   PRRPGD
Sbjct:  117 TINLFQVMSKFNCKKLVISSSATVYGQPDQIPCVEDSNLHAMNPYGRSKLFVEEVARDIQRAEAEWRIILLRYFNPVGAHESGQIGEDPR---GLPNNLMPYIQQVAVARLPELNIYGHDYPTKDGTAIRDYIHVMDLADGHIAALRKLFTTDNIGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPIKMCPRRPGD 309          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_MOUSE (UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28
Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:   10 SNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSKNSDMA--VMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            + T+ +LE M  HGV  L++SS+   YG P+ +P+ E  P     NPYGK+K   E++I D  + +D A   ++LRYFN IG+   GR+GE P+        +       A G    L V G DY+T DGT VRDYI V DL   H+ AL++ + +     YN+GTG G SV + V+A +KA+   I      RR GD A
Sbjct:  109 TGTIQLLEIMRAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCR-ADTAWNAVLLRYFNPIGAHASGRIGEDPQGI---PNNLMPYVSQVAIGRREALNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLKEQCGCRTYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVA 304          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.305e-28
Identity = 77/202 (38.12%), Postives = 111/202 (54.95%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            N  + ++V++E M +  V+T+++SS+   YG+P+ +PI E  P     NPYG +K M E I+ D  K    ++ ++LRYFN +G+   G +GE P         +       A G +  L V G DY+T DGT VRDYI V DL   H+KAL++ Q      +YN+GTG G SV + V+A + A    I      RRPGD A
Sbjct:   99 NNVTGSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERILEDTVKAFPQLSAVVLRYFNRVGAHESGLIGEDPNGI---PNNLMPFISQVAVGKLPQLSVFGGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAFEAANGITIPYKVVDRRPGDIA 297          
The following BLAST results are available for this feature:
BLAST of CX288562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE_NEIMB3.894e-2938.12UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_STRLI5.086e-2939.20UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]
GALE_NEIMA5.086e-2938.12UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIMC1.133e-2838.61UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIGO1.133e-2838.12UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae G... [more]
GALE_YEREN1.933e-2838.31UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]
GALE_STRTR1.933e-2838.38UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
GALE1_CYATE1.933e-2835.20UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GALE_MOUSE3.297e-2839.50UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE... [more]
GALE_PASHA4.305e-2838.12UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02001G09SK IF1 Citrus clementina cDNA clone C02001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288562 ID=CX288562; Name=CX288562; organism=Citrus clementina; type=EST; length=597bp
AACATTACGTCAAATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGG
CGTGGATACTTTGATATATTCCAGTACATGCGCAACATACGGAGAGCCTG
AAAAGATGCCCATTACTGAAGAAACTCCACAGGCTCCAATTAATCCATAT
GGTAAAGCTAAGAAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAA
TTCAGACATGGCAGTTATGATCCTACGGTACTTCAATGTCATCGGTTCTG
ATCCAGAGGGTAGATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCAT
GGGCGAATATCAGGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGG
GCTGAAGGTCAAAGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTC
GTGATTATATTGACGTCAATGATCTGGTTGATGCTCATGTCAAAGCTCTT
GAGAGGGCACAACCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAA
AGGGAGATCGGTAAAGGAGTTTGTTGAGGCATGTAAAAAAGCAACATCGG
CAAATATCAAAGTTATATATGAACCTCGCCGCCCAGGTGACTATGCT
back to top