CX288562

Overview
NameCX288562
Unique NameCX288562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_PONAB (UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 76/199 (38.19%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   10 SNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            + T+ +LE M  HGV  L++SS+   YG P+ +P+ E  P     NPYGK+K   E++I D  + +     ++LRYFN  G+   G +GE P+        +       A G    L V G DY T DGT VRDYI V DL   H+ AL + + +    IYN+GTG G SV + V+A +KA+   I      RR GD A
Sbjct:  110 TGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGI---PNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVA 305          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 76/199 (38.19%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   10 SNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            + T+ +LE M  HGV  L++SS+   YG P+ +P+ E  P     NPYGK+K   E++I D  + +     ++LRYFN  G+   G +GE P+        +       A G    L V G DY T DGT VRDYI V DL   H+ AL + + +    IYN+GTG G SV + V+A +KA+   I      RR GD A
Sbjct:  110 TGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGI---PNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVA 305          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 77/200 (38.50%), Postives = 104/200 (52.00%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-APINPYGKAKKMAEDIILDFS-KNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N    TLV+LE+M    V  LI+SS+   YG+  ++P  E  P  +P +PYG++K M E I+ D    +    + ILRYFN +G+ P G +GE P+        +       A G    L + G  Y T DGT VRDYI V DL D HV A++    K  V I+N+G G G SV + V A  KA    +   + PRR GD
Sbjct:   99 NNVFGTLVLLEAMRAAQVKNLIFSSSATVYGDQPQIPYVESFPTGSPSSPYGRSKLMVEQILQDVQLADPQWNMTILRYFNPVGAHPSGLMGEDPQGI---PNNLMPFIAQVAVGRRESLAIFGNGYPTPDGTGVRDYIHVVDLADGHVAAMKTLHGKPGVHIFNLGAGVGHSVLQVVAAFSKACGKPLAYHFAPRREGD 295          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: YGRE_SCHPO (Uncharacterized protein C365.14c OS=Schizosaccharomyces pombe GN=SPBC365.14c PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 75/204 (36.76%), Postives = 109/204 (53.43%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGI--YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N  S T+ ++E M ++ V   ++SS+   YG+P +    +PI E  P+   +PYG+ K   E+II D +K N  +   +LRYFN  G+ P G LGE P   L     +       A G +  L V G DY T+DGT +RDYI V DL +AHV AL+  +   V    +N+G+G G +V + + A  KA   ++     PRR GD
Sbjct:  105 NNISGTINLIECMKKYNVRDFVFSSSATVYGDPTRPGGTIPIPESCPREGTSPYGRTKLFIENIIEDETKVNKSLNAALLRYFNPGGAHPSGELGEDP---LGIPNNLLPYIAQVAVGRLDHLNVFGDDYPTSDGTPIRDYIHVCDLAEAHVAALDYLRQHFVSCRPWNLGSGTGSTVFQVLNAFSKAVGRDLPYKVTPRRAGD 305          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.211e-24
Identity = 75/203 (36.95%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGE----PEKMPITEETPQAPINPYGKAKKMAEDIILDF--SKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALE--RAQPKKVGI---YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+V+LE M ++ V   ++SS+   YG+    P  +PI EE P  P NPYG  K   E+I+ D   S        ILRYFN IG+ P G +GE P   L     +       A G    L + G DY + DGT +RDYI V DL   H+ AL+   A  +  G+   +N+G+GKG +V E   A  KA+  ++      RR GD
Sbjct:  115 TVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDP---LGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGD 314          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.926e-24
Identity = 74/200 (37.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEETPQAPINPYGKAKKMAEDIILDFS-KNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGI---YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+ +LE M  H V  L++SS+   YG+  +    +PI E  P  P NPYGK K   ED++ D    +   +  ILRYFN IG+ P G +GE P   L     +       A G    L V G DY + DGT +RDYI V DL   H+ AL+  + K  G    +N+GTG G +V +   A   A   N + +   RR GD
Sbjct:  108 TINLLECMKSHDVKKLVFSSSATVYGDATRFENMIPIPETCPTGPTNPYGKTKLTIEDMMRDLHFSDKSFSFAILRYFNPIGAHPSGVIGEDP---LGIPNNLLPFMAQVAIGRRPKLYVFGDDYDSVDGTPIRDYIHVVDLAKGHLAALKYLE-KYAGTCREWNLGTGHGTTVLQMYRAFCDAIGFNFEYVVTARRDGD 303          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.097e-23
Identity = 77/207 (37.20%), Postives = 100/207 (48.31%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP--KKVGIY---NVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N    T+ +L  M  H V T+++SS+   YG+  +    +PI E  P  P NPYGK K   E+II D  + ++     ILRYFN IG+ P G LGE P   L     +       A G    L V G DY + DGT +RDYI V DL   H+ AL          G+Y   N+GTGKG SV +   A  K    ++      RR GD
Sbjct:  104 NNICGTITLLNVMREHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENIIKDLHTSDNTWRGAILRYFNPIGAHPSGLLGEDP---LGIPNNLLPFLAQVAIGRREKLLVFGDDYDSHDGTPIRDYIHVVDLAKGHIAALNYLNKINNSEGMYREWNLGTGKGSSVFDIYHAFCKEVGKDLPYEVVGRRTGD 307          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.113e-23
Identity = 75/201 (37.31%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   10 SNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP--QAPINPYGKAKKMAEDIILDFSKNSDMA--VMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYA 597
            + T+ +LE M   GV +L++SS+   YG+P  +P +   P  +    PYGK+K   E++I D  + +D A   ++LRYF  IG+    R+GE P+        +       A G    L V G DY+T DGT VRDYI V DL   H+ AL++ + +    IYN+GTG G SV + V+A +KA+   I      RR GD A
Sbjct:  110 TGTIQLLEIMRAMGVKSLVFSSSATVYGKP--VPASGRGPPHRGCTKPYGKSKFFIEEMIQDLCR-ADTAWNAVLLRYFIPIGAHRSARIGEDPQGI---PNNLMPYVSQVAIGRREALNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVA 304          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.022e-22
Identity = 71/206 (34.47%), Postives = 101/206 (49.03%), Query Frame = 1
Query:    1 NITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGI---YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            N     + +L+ M  + V  +++SS+   YG+  +    +PI E  P  P NPYG+ K   E+II D ++ +      ILRYFN IG+ P G +GE P   L     +       A G    L V G+DY++ DGT +RDYI V DL   H+ AL      K  G+   +N+GTG G +V E   A  +A    +      RR GD
Sbjct:  100 NNVGGAISLLKVMEENNVKNIVFSSSATVYGDATRFENMIPIPEHCPTGPTNPYGETKITIENIIRDVYANDKSWKCAILRYFNPIGAHPSGLIGEDP---LGIPNNLLPFLAQVAIGRREKLSVFGSDYNSKDGTPIRDYIHVIDLAKGHIAALNYLFNHKDNGLCREWNLGTGNGSTVFEVFNAFCEAVGKKLPFEVVGRRDGD 302          
BLAST of CX288562 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 57/195 (29.23%), Postives = 91/195 (46.67%), Query Frame = 1
Query:   16 TLVVLESMARHGVDTLIYSSTC-ATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGS--DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 591
            T+ +LE M ++ +D ++++S+  A YGEP  +P+ E  P  P++PYG +K + E+ I  +++   +   ILRY NV G   DP+G  G                        I  +    +     DG   RD++ V D+  A++ AL      K  I N+GTGK  SV E  +  K       + IY+  R G+
Sbjct:   95 TINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPKGEAG-------------------VISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNW----KNEIVNIGTGKETSVNELFDIIKHEIGFRGEAIYDKPREGE 266          
The following BLAST results are available for this feature:
BLAST of CX288562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE_PONAB4.760e-2738.19UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE... [more]
GALE_HUMAN4.760e-2738.19UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]
GALE_YERPE1.060e-2638.50UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
YGRE_SCHPO1.385e-2636.76Uncharacterized protein C365.14c OS=Schizosaccharo... [more]
GAL10_YEAST2.211e-2436.95Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]
GAL10_KLULA4.926e-2437.00Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]
GAL10_SCHPO1.097e-2337.20Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GALE_RAT7.113e-2337.31UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
GAL10_PACTA6.022e-2234.47Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GALE_METJA7.130e-1529.23Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]

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Properties
Property NameValue
Genbank descriptionC02001G09SK IF1 Citrus clementina cDNA clone C02001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288562 ID=CX288562; Name=CX288562; organism=Citrus clementina; type=EST; length=597bp
AACATTACGTCAAATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGG
CGTGGATACTTTGATATATTCCAGTACATGCGCAACATACGGAGAGCCTG
AAAAGATGCCCATTACTGAAGAAACTCCACAGGCTCCAATTAATCCATAT
GGTAAAGCTAAGAAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAA
TTCAGACATGGCAGTTATGATCCTACGGTACTTCAATGTCATCGGTTCTG
ATCCAGAGGGTAGATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCAT
GGGCGAATATCAGGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGG
GCTGAAGGTCAAAGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTC
GTGATTATATTGACGTCAATGATCTGGTTGATGCTCATGTCAAAGCTCTT
GAGAGGGCACAACCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAA
AGGGAGATCGGTAAAGGAGTTTGTTGAGGCATGTAAAAAAGCAACATCGG
CAAATATCAAAGTTATATATGAACCTCGCCGCCCAGGTGACTATGCT
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