CX288571

Overview
NameCX288571
Unique NameCX288571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 65/157 (41.40%), Postives = 86/157 (54.78%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI 456
            P  N F +G    I PS ++LF+  E   LLSG   +IDV+D  KNT YT GY    + I+ FWEVV+    +ER +LL+FVT  SR P  GF ++       +FTI  VA  ++L           LP++STC N LKLP Y     LK +LL A+
Sbjct:  790 PQINGFLQGFHMFIPPSLIQLFDEYELELLLSG-MPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTANL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVAL 934          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.678e-22
Identity = 65/157 (41.40%), Postives = 85/157 (54.14%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI 456
            P  N F +G    I PS ++LF+  E   LLSG   +IDV+D  KNT YT GY    + I+ FWEVV+    +ER +LL+FVT  SR P  GF ++       +FTI  VA   +L           LP++STC N LKLP Y     LK +LL A+
Sbjct:  758 PQINGFLQGFHMFIPPSLIQLFDEYELELLLSG-MPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVAL 902          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 65/159 (40.88%), Postives = 86/159 (54.09%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI-SSNAGF 474
            P  NAF  G  +LI    + +FN  E   L+SG   +ID DDL+ NT YT  Y+ GS  I  FWEVV+ F  ++    L+FVT  S+ PL GFK LQ      ++    +  A       ERLPSA TC+N L LP Y+    L+ +LL AI  ++ GF
Sbjct: 3528 PQINAFLEGFNELIPRELVSIFNDKELELLISG-LPEIDFDDLKANTEYTS-YTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGA------PERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGF 3678          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS*GSDYFCF 507
            AF  G  ++I    + +FN  E   L+SG   DID+DD + NT Y   YS G+  I+ FW  V  F+ +E   LL+FVT  S+ PL GFK L+       F IH+           G +D  RLPS+ TC+N L LP Y+   TL+++LL AI++        GSDYF F
Sbjct: 3877 AFLTGFHEIIPEELIAIFNEQELELLISG-LPDIDIDDWKANTEYHN-YSAGAPQIQWFWRAVRSFDKEELAKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHR---------DYGSKD--RLPSSHTCFNQLDLPEYENYETLRSQLLKAITA--------GSDYFGF 4025          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 61/160 (38.12%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            NAFY G  +L+SP  + +F+  E  +LL GG  D+DV+D + +T Y   Y      IK FWE++ G++ ++R  LL+F T  SR P+ GF+ LQ S     FTI K                ++LP A TC+N L LP Y    TL  KL  A+ +  GF
Sbjct:  638 NAFYSGFVELVSPDLVNVFDEREL-ELLIGGISDVDVEDWKSHTEYRT-YIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKAGTP------------DQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAVENTVGF 783          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HACE1_MOUSE (E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.943e-21
Identity = 66/157 (42.04%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI 456
            P  NAF +G    I PS ++LF+  E   LLSG   +IDV+D  KNT YT GY      I+ FWEVVE    +ER +LL+FVT  SR P  GF ++       +FTI  V    +L           LP++STC N LKLP Y     LK +LL A+
Sbjct:  755 PQINAFLQGFHMFIPPSLIQLFDEYELELLLSG-MPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVAL 899          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HACE1_HUMAN (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.538e-21
Identity = 66/157 (42.04%), Postives = 83/157 (52.87%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI 456
            P  NAF +G    I PS ++LF+  E   LLSG   +IDV D  KNT YT GY      I+ FWEVVE    +ER +LL+FVT  SR P  GF ++       +FTI  V    +L           LP++STC N LKLP Y     LK +LL A+
Sbjct:  755 PQINAFLQGFHMFIPPSLIQLFDEYELELLLSG-MPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNL-----------LPTSSTCINMLKLPEYPSKEILKDRLLVAL 899          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.259e-20
Identity = 62/160 (38.75%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            NA   GL +LI  S L++FN +E + LL+G R DIDV D ++ T Y   Y+E    +  FWE++  + P+++  LL+F T  SR PL GFK +  S     FTI KV              + +LP A TC+N L +P Y     L+ KL  AI   AGF
Sbjct:  523 NALKGGLNELIPDSVLQIFNENELDTLLNGKR-DIDVQDWKRFTDYRS-YTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGSDGPRKFTIEKVG------------HISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAGF 668          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            NAF+ G ++LI    + +F+  E  +LL GG  +ID++D +K+T Y   YSE  + IK FWE+++ +  +++  LL+F T  SR P+ GFK LQ S     FTI K              +  +LP A TC+N L LP Y     L  KL  A+    GF
Sbjct:  619 NAFHEGFSELIPQELINVFDEREL-ELLIGGISEIDMEDWKKHTDYRS-YSENDQIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRKFTIEKAG------------EPNKLPKAHTCFNRLDLPPYTSKKDLDHKLSIAVEETIGF 764          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.066e-19
Identity = 62/157 (39.49%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   16 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS-SNAGFELS 483
            F  G   LIS   + +F+  E   L+SG   DIDVDD + NT Y   Y+   + +  FW  V  F+ +ER  LL+FVT  S+ PL GFK L     +    C  S+    G    ERLPS+ TC+N L LP Y+   TL+  LL AI+  + GF L+
Sbjct: 3120 FLVGFYALISKDLITIFDEQELELLISG-LPDIDVDDWKNNTTYVN-YTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGV----CKFSIHRDFGSS--ERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFGLA 3268          
The following BLAST results are available for this feature:
BLAST of CX288571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HACE1_XENLA3.915e-2241.40E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
HACE1_XENTR6.678e-2241.40E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]
UPL1_ARATH1.139e-2140.88E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
TOM1_NEUCR1.139e-2139.41E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
PUB3_SCHPO1.139e-2138.13E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]
HACE1_MOUSE1.943e-2142.04E3 ubiquitin-protein ligase HACE1 OS=Mus musculus ... [more]
HACE1_HUMAN2.538e-2142.04E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]
PUB2_SCHPO1.259e-2038.75E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
PUB1_SCHPO8.163e-2036.88E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]
TOM1_YEAST1.066e-1939.49E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC02001H07SK IF1 Citrus clementina cDNA clone C02001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288571 ID=CX288571; Name=CX288571; organism=Citrus clementina; type=EST; length=630bp
CCCTTCTCAAATGCATTTTACAGAGGTTTAACTGATCTCATATCACCATC
TTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTACTTTCAGGAG
GAAGACATGACATTGATGTAGATGATTTGAGAAAAAATACACGGTATACC
GGTGGCTATTCTGAAGGGAGTCGAACAATTAAACTCTTTTGGGAGGTTGT
TGAAGGATTTGAACCAAAAGAACGATGTATGCTGCTTAAATTTGTGACAA
GTTGCTCTCGAGCTCCATTGCTTGGATTCAAACACTTGCAGCCATCTTTT
ACAATTCACAAGGTTGCATGTGATTCGTCGCTTTGGGCAGTCATTGGCGG
ACAGGATGTAGAACGGCTTCCGTCGGCTTCTACATGCTACAATACTCTCA
AGCTTCCTACATACAAGCGTTCAAGCACTTTGAAAGCAAAACTTCTTTAT
GCAATCAGTTCCAATGCTGGGTTTGAACTTTCTTAGGGATCTGACTATTT
CTGCTTCAGGTGAATGAATTTGTCATGCACTTCTTGTCCCTGAATCCTTA
CTTCTACTCTCAACTGAAAACGCTTCTGATTGCTACTGATCGCAAAGACT
GTAAAAAAAAAAAAATCTGTCATGTGGAAT
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