CX288571

Overview
NameCX288571
Unique NameCX288571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig133 contig Ccv1_Contig133:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECW2_MOUSE (E3 ubiquitin-protein ligase HECW2 OS=Mus musculus GN=Hecw2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.223e-17
Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            + +  RG  +++    + +F+A E  +L+  G  +ID++D R NT Y GGY +    I+ FW  VE F  ++R  LL+FVT  S  P  GF  L+ S    +   +   W       +  LP A TC+N L LP Y   S L  KLL A+   + F L
Sbjct: 1428 TESLVRGFYEVVDARLVSVFDAREL-ELVIAGTAEIDLNDWRNNTEYRGGYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEK--WG-----KITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEETSTFGL 1577          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: SMUF2_DANRE (E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio GN=smurf2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.903e-17
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            A  +G  ++I    LK F+  E  +L+  G   ID++D + NTR     +  S  +K FW  VE ++ + R  LL+FVT  SR PL GFK LQ +     FTIH++  D+S            LP A TC+N + +P Y+    L  KLL AI    GF
Sbjct:  617 ALQKGFNEVIPQHLLKAFDEKEL-ELIVCGLGKIDINDWKSNTRLKH-CTPDSNIVKWFWRAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQI--DAS---------TNNLPKAHTCFNRIDIPPYESYDKLYDKLLTAIEETCGF 762          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECW2_HUMAN (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.903e-17
Identity = 54/158 (34.18%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            + +  RG  +++    + +F+A E  +L+  G  +ID+ D R NT Y GGY +    I+ FW  VE F  ++R  LL+FVT  S  P  GF  L+ S    +   +   W       +  LP A TC+N L LP Y   S L  KLL A+   + F L
Sbjct: 1422 TESLVRGFYEVVDARLVSVFDAREL-ELVIAGTAEIDLSDWRNNTEYRGGYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEK--WG-----KITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEETSTFGL 1571          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 58/161 (36.02%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            + AF  G  +++   WL+ F+  E   +L G   ++D+ D ++NT Y   Y+  S+ I  FW+ V+  + + R  LL+FVT   R PL GF  L  S     F I KV  D+  W          LP + TC+N L LP YK    LK KLL+AI    GF
Sbjct:  769 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCG-MQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDT--W----------LPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGF 915          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 58/161 (36.02%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            + AF  G  +++   WL+ F+  E   +L G   ++D+ D ++NT Y   Y+  S+ I  FW+ V+  + + R  LL+FVT   R PL GF  L  S     F I KV  D+  W          LP + TC+N L LP YK    LK KLL+AI    GF
Sbjct:  773 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCG-MQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDT--W----------LPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGF 919          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: NEDD4_DROME (E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.953e-17
Identity = 60/160 (37.50%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            ++F  G   +I  + +K+F+  E  +LL  G  +IDV D R+NT Y G Y      I+ FW  V  F  + R  LL+FVT  SR P+ GFK L  S     FTI K       W           P A TC+N L LP Y+    LK KL+ AI  + GF
Sbjct:  857 SSFLDGFGSIIPLNLIKIFDEHEL-ELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFSNEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEK-------WGT-----PNNFPRAHTCFNRLDLPPYEGYLQLKDKLIKAIEGSQGF 1003          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: SUDX_DROME (E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            +  F  G  +++   WLK F+  E   +L G   D+DV+D ++NT Y   Y+  S+ +  FW+ V   + ++R  LL+FVT   R P+ GF  L  S     F I KV  ++  W          LP + TC+N L LP YK    L  KL +AI    GF
Sbjct:  800 TKTFLEGFNEVVPLEWLKYFDERELELILCG-MQDVDVEDWQRNTIYRH-YNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKVGKET--W----------LPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEETEGF 946          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: SMUF1_DROME (E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 59/162 (36.42%), Postives = 80/162 (49.38%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS--------FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            A  +G  +LI    L+ F+  E  +L+ GG   IDV+D R NTR     +E ++ +  FW+VVE +  + R  LL+FVT  SR PL GF+ LQ S        FTIH  A              + LP A TC+N + LP Y+    L  KL  A+    GF
Sbjct:  909 ALQKGFCELIPSHLLRPFDEREL-ELVIGGISSIDVNDWRNNTRLKHCTNETTQVL-WFWQVVESYSSEMRARLLQFVTGSSRVPLQGFRALQGSTGAVGPRLFTIHLTA----------DVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQAVEETCGF 1058          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            + AF+ G  +++   +L+ F+A E   LL G   +ID++D +++  Y   Y+  S+ I  FW+ V+  + ++R  LL+FVT   R P+ GF  L  S     F I KV  ++  W          LP + TC+N L LP YK    LK KLL+AI    GF
Sbjct:  715 TQAFFEGFNEILPQQYLQYFDAKELEVLLCG-MQEIDLNDWQRHAIYRH-YTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKEN--W----------LPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGF 861          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 1
Query:    7 SNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            + AF+ G  +++   +L+ F+A E   LL G   +ID++D +++  Y   Y+  S+ I  FW+ V+  + ++R  LL+FVT   R P+ GF  L  S     F I KV  ++  W          LP + TC+N L LP YK    LK KLL+AI    GF
Sbjct:  754 TQAFFEGFNEILPQQYLQYFDAKELEVLLCG-MQEIDLNDWQRHAIYRH-YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKEN--W----------LPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGF 900          
The following BLAST results are available for this feature:
BLAST of CX288571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HECW2_MOUSE2.223e-1734.18E3 ubiquitin-protein ligase HECW2 OS=Mus musculus ... [more]
SMUF2_DANRE2.903e-1736.48E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio ... [more]
HECW2_HUMAN2.903e-1734.18E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens ... [more]
WWP1_MOUSE3.792e-1736.02NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]
WWP1_HUMAN3.792e-1736.02NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom... [more]
NEDD4_DROME4.953e-1737.50E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila m... [more]
SUDX_DROME8.448e-1734.16E3 ubiquitin-protein ligase Su(dx) OS=Drosophila m... [more]
SMUF1_DROME8.448e-1736.42E3 ubiquitin-protein ligase Smurf1 OS=Drosophila m... [more]
ITCH_MOUSE8.448e-1734.78E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
ITCH_HUMAN8.448e-1734.78E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC02001H07SK IF1 Citrus clementina cDNA clone C02001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288571 ID=CX288571; Name=CX288571; organism=Citrus clementina; type=EST; length=630bp
CCCTTCTCAAATGCATTTTACAGAGGTTTAACTGATCTCATATCACCATC
TTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTACTTTCAGGAG
GAAGACATGACATTGATGTAGATGATTTGAGAAAAAATACACGGTATACC
GGTGGCTATTCTGAAGGGAGTCGAACAATTAAACTCTTTTGGGAGGTTGT
TGAAGGATTTGAACCAAAAGAACGATGTATGCTGCTTAAATTTGTGACAA
GTTGCTCTCGAGCTCCATTGCTTGGATTCAAACACTTGCAGCCATCTTTT
ACAATTCACAAGGTTGCATGTGATTCGTCGCTTTGGGCAGTCATTGGCGG
ACAGGATGTAGAACGGCTTCCGTCGGCTTCTACATGCTACAATACTCTCA
AGCTTCCTACATACAAGCGTTCAAGCACTTTGAAAGCAAAACTTCTTTAT
GCAATCAGTTCCAATGCTGGGTTTGAACTTTCTTAGGGATCTGACTATTT
CTGCTTCAGGTGAATGAATTTGTCATGCACTTCTTGTCCCTGAATCCTTA
CTTCTACTCTCAACTGAAAACGCTTCTGATTGCTACTGATCGCAAAGACT
GTAAAAAAAAAAAAATCTGTCATGTGGAAT
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