CX288571
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17 Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS-NAGFELS 483 AF G ++I + +F E L+SG ID+DDL+ NT Y Y S I+ FW + F+ +R L+FVT S+ PL GF L+ F IH+ + +RLPSA TC+N L LP Y+ L+ LL AI + GF L+ Sbjct: 173 AFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYHK-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR-----------DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 322
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4) HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17 Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS-NAGFELS 483 AF G ++I + +F E L+SG ID+DDL+ NT Y Y S I+ FW + F+ +R L+FVT S+ PL GF L+ F IH+ + +RLPSA TC+N L LP Y+ L+ LL AI + GF L+ Sbjct: 4228 AFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYHK-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR-----------DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 4377
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17 Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS-NAGFELS 483 AF G ++I + +F E L+SG ID+DDL+ NT Y Y S I+ FW + F+ +R L+FVT S+ PL GF L+ F IH+ + +RLPSA TC+N L LP Y+ L+ LL AI + GF L+ Sbjct: 4225 AFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYHK-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR-----------DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 4374
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.103e-16 Identity = 55/155 (35.48%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLK-LFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474 AF RG + + S LK LF E L+ G R+ +D L + T Y GGY+ S I+ FWE+V F +++ + L F T RAP+ G L+ + G D ERLP++ TC+N L LP Y L +LL AI+ GF Sbjct: 742 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKLK-------------MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKGF 882
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.882e-16 Identity = 55/157 (35.03%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480 +AF+ G + L LF +E ++ G + D +L KNT Y G Y TIK+FWEV +++ L F+T R P+LG K L K+ S+ G E LP + TC+N L LP Y TL++KL+ AI N GF L Sbjct: 914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQST------GGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAIDHNEGFSL 1056
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16 Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 1 Query: 1 PFSNAFYRGLTDLISP-SWLKLFNASEFNQLLSGGRHD--IDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474 P N F G + + + +KLFN+ E +L+ G D LR T+Y GG+S+ SR + FWE++E ++ + LL+FVT+ R P G + F I +++G D + LP A TC+N + L Y L+ KLL+AI+ + G+ Sbjct: 741 PQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI--PFKI----------SLLGSHDSDDLPLAHTCFNEICLWNYSSKKKLELKLLWAINESEGY 889
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16 Identity = 54/157 (34.39%), Postives = 74/157 (47.13%), Query Frame = 1 Query: 10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480 +AF+ G + L LF +E ++ G + D +L KNT Y G Y TIK+FWEV +++ L F+T R P+LG K L K+ S+ G LP + TC+N L LP Y TL+ KL+ AI N GF L Sbjct: 914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQST------GGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAIDHNEGFSL 1056
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.340e-16 Identity = 54/157 (34.39%), Postives = 74/157 (47.13%), Query Frame = 1 Query: 10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480 +AF+ G + L LF +E ++ G + D +L KNT Y G Y TIK+FWEV +++ L F+T R P+LG K L K+ S+ G LP + TC+N L LP Y TL+ KL+ AI N GF L Sbjct: 914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQST------GGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAIDHNEGFSL 1056
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.549e-15 Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = 1 Query: 1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHD-IDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474 P +F G +I + +LF + E QL+ G +DV LR TRY GG+ + S ++ FWE++ E ++ LL FVT R P G + F I ++ +RLP + TC+N + L YK TL+ KL+ A+ + G+ Sbjct: 691 PGFESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTI--PFRISRIR-----------SGADRLPLSHTCFNEICLHEYKDKETLRNKLIIALEESQGY 836
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14 Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480 AFY G + + + L L E ++L G D+D+ L+++T+Y G Y++ TIK FW+VV GF + LL F T R P+ G L +F I K ++ LP A TC+N L LP YK LK KL+ IS++ GF L Sbjct: 635 AFYYGFHSVCASNALMLLRPEEV-EILVCGSPDLDMHALQRSTQYDG-YAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL--NFKISKNETSTNC-----------LPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGL 775 The following BLAST results are available for this feature:
BLAST of CX288571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288571 ID=CX288571; Name=CX288571; organism=Citrus clementina; type=EST; length=630bpback to top |