CX288571

Overview
NameCX288571
Unique NameCX288571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig133 contig Ccv1_Contig133:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS-NAGFELS 483
            AF  G  ++I    + +F   E   L+SG    ID+DDL+ NT Y   Y   S  I+ FW  +  F+  +R   L+FVT  S+ PL GF  L+       F IH+             +  +RLPSA TC+N L LP Y+    L+  LL AI   + GF L+
Sbjct:  173 AFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYHK-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR-----------DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 322          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS-NAGFELS 483
            AF  G  ++I    + +F   E   L+SG    ID+DDL+ NT Y   Y   S  I+ FW  +  F+  +R   L+FVT  S+ PL GF  L+       F IH+             +  +RLPSA TC+N L LP Y+    L+  LL AI   + GF L+
Sbjct: 4228 AFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYHK-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR-----------DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 4377          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS-NAGFELS 483
            AF  G  ++I    + +F   E   L+SG    ID+DDL+ NT Y   Y   S  I+ FW  +  F+  +R   L+FVT  S+ PL GF  L+       F IH+             +  +RLPSA TC+N L LP Y+    L+  LL AI   + GF L+
Sbjct: 4225 AFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYHK-YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR-----------DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFGLA 4374          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.103e-16
Identity = 55/155 (35.48%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLK-LFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            AF RG   + + S LK LF   E   L+ G R+ +D   L + T Y GGY+  S  I+ FWE+V  F  +++ + L F T   RAP+ G   L+             +     G D ERLP++ TC+N L LP Y     L  +LL AI+   GF
Sbjct:  742 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKLK-------------MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKGF 882          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.882e-16
Identity = 55/157 (35.03%), Postives = 76/157 (48.41%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            +AF+ G   +     L LF  +E   ++ G  +  D  +L KNT Y G Y     TIK+FWEV      +++   L F+T   R P+LG K L       K+   S+      G   E LP + TC+N L LP Y    TL++KL+ AI  N GF L
Sbjct:  914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQST------GGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAIDHNEGFSL 1056          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISP-SWLKLFNASEFNQLLSGGRHD--IDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            P  N F  G   + +  + +KLFN+ E  +L+ G       D   LR  T+Y GG+S+ SR +  FWE++E ++   +  LL+FVT+  R P  G   +   F I          +++G  D + LP A TC+N + L  Y     L+ KLL+AI+ + G+
Sbjct:  741 PQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI--PFKI----------SLLGSHDSDDLPLAHTCFNEICLWNYSSKKKLELKLLWAINESEGY 889          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16
Identity = 54/157 (34.39%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            +AF+ G   +     L LF  +E   ++ G  +  D  +L KNT Y G Y     TIK+FWEV      +++   L F+T   R P+LG K L       K+   S+      G     LP + TC+N L LP Y    TL+ KL+ AI  N GF L
Sbjct:  914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQST------GGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAIDHNEGFSL 1056          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.340e-16
Identity = 54/157 (34.39%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            +AF+ G   +     L LF  +E   ++ G  +  D  +L KNT Y G Y     TIK+FWEV      +++   L F+T   R P+LG K L       K+   S+      G     LP + TC+N L LP Y    TL+ KL+ AI  N GF L
Sbjct:  914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQST------GGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAIDHNEGFSL 1056          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.549e-15
Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = 1
Query:    1 PFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHD-IDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 474
            P   +F  G   +I  +  +LF + E  QL+ G     +DV  LR  TRY GG+ + S  ++ FWE++   E  ++  LL FVT   R P  G   +   F I ++               +RLP + TC+N + L  YK   TL+ KL+ A+  + G+
Sbjct:  691 PGFESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTI--PFRISRIR-----------SGADRLPLSHTCFNEICLHEYKDKETLRNKLIIALEESQGY 836          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            AFY G   + + + L L    E  ++L  G  D+D+  L+++T+Y G Y++   TIK FW+VV GF    +  LL F T   R P+ G   L  +F I K    ++            LP A TC+N L LP YK    LK KL+  IS++ GF L
Sbjct:  635 AFYYGFHSVCASNALMLLRPEEV-EILVCGSPDLDMHALQRSTQYDG-YAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL--NFKISKNETSTNC-----------LPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGL 775          
The following BLAST results are available for this feature:
BLAST of CX288571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HUWE1_RAT8.448e-1734.97E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE8.448e-1734.97E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN8.448e-1734.97E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
UBE3A_MOUSE1.103e-1635.48Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
HERC4_HUMAN1.882e-1635.03Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
HUL4_YEAST7.151e-1632.30Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
HERC4_MOUSE7.151e-1634.39Probable E3 ubiquitin-protein ligase HERC4 OS=Mus ... [more]
HERC4_RAT9.340e-1634.39Probable E3 ubiquitin-protein ligase HERC4 OS=Ratt... [more]
HUL4_ASHGO3.549e-1530.82Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
HECD2_PONAB1.349e-1435.90Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionC02001H07SK IF1 Citrus clementina cDNA clone C02001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288571 ID=CX288571; Name=CX288571; organism=Citrus clementina; type=EST; length=630bp
CCCTTCTCAAATGCATTTTACAGAGGTTTAACTGATCTCATATCACCATC
TTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTACTTTCAGGAG
GAAGACATGACATTGATGTAGATGATTTGAGAAAAAATACACGGTATACC
GGTGGCTATTCTGAAGGGAGTCGAACAATTAAACTCTTTTGGGAGGTTGT
TGAAGGATTTGAACCAAAAGAACGATGTATGCTGCTTAAATTTGTGACAA
GTTGCTCTCGAGCTCCATTGCTTGGATTCAAACACTTGCAGCCATCTTTT
ACAATTCACAAGGTTGCATGTGATTCGTCGCTTTGGGCAGTCATTGGCGG
ACAGGATGTAGAACGGCTTCCGTCGGCTTCTACATGCTACAATACTCTCA
AGCTTCCTACATACAAGCGTTCAAGCACTTTGAAAGCAAAACTTCTTTAT
GCAATCAGTTCCAATGCTGGGTTTGAACTTTCTTAGGGATCTGACTATTT
CTGCTTCAGGTGAATGAATTTGTCATGCACTTCTTGTCCCTGAATCCTTA
CTTCTACTCTCAACTGAAAACGCTTCTGATTGCTACTGATCGCAAAGACT
GTAAAAAAAAAAAAATCTGTCATGTGGAAT
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