CX288572

Overview
NameCX288572
Unique NameCX288572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14318 contig Ccv1_Contig14318:281..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_DROME (Putative oxidoreductase GLYR1 homolog OS=Drosophila melanogaster GN=CG4747 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 66/180 (36.67%), Postives = 104/180 (57.78%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK 548
            I  +L+  G KV VWNRT+ KC      GA V  +P +V++   +    ++DP  A  +VF   GVL+ +    K Y++MST+D +TS+ I   I    G +LEA + GS+Q A  G L+IL+ G++++++E  S    I K  FFLG +GN  K+ L++  I+G  +   +E L LA++
Sbjct:  330 IVKDLIYTGHKVVVWNRTIDKCQPFAEAGAEVKDTPMDVVEAADVIFCCVSDPKGAKDLVFGNCGVLQLKDLNNKAYVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEGMLIILAGGDRSVFEECHSCFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVGLAEALALADR 509          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLYR1_DROPS (Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18401 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.144e-31
Identity = 69/180 (38.33%), Postives = 102/180 (56.67%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK 548
            I  +L+  G KV VWNRT+ KC   V  GA V  +P +V++   I    ++DP  A  +VF   GVL+ +    K Y++MSTVD +TS+ I   I    G +LEA + GS+Q A  G L+IL+ G++ +++E  S    I K  FFLG VGN  K+ L++  I    +   +E L LA++
Sbjct:  340 IVKDLIYTGHKVVVWNRTIDKCQPFVEAGAEVKDTPMDVVEAADIIFCCVSDPKGAKDLVFGNCGVLQLKDLRNKAYVEMSTVDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAADGMLIILAGGDRTVFEECHSCFKTIAKNTFFLGNVGNACKVNLILQTIQAVSLVGLAEALALADR 519          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: YFJR_BACSU (Uncharacterized oxidoreductase yfjR OS=Bacillus subtilis GN=yfjR PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.910e-22
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAK-MKLVVNMIMGCMMNTFSEGLVLAEKSGLD 560
            I+ N+L+ G+++TV+NRT  K ++LV  GA    +P    K   I I MLAD  +  +V F + G+LE +     +I MST+  E S K++ A   KG  FL APV G    A    L I++AG       A   L+ + ++ F +GE    A   K+ +N ++  M+   SE  ++ EK GL+
Sbjct:   15 IARNVLQAGYELTVYNRTKQKTEDLVTEGAQAADTPRLAAKSADIVITMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSLSQQIFDVGEESKTANAAKISINFLLVSMLEALSESFLMMEKYGLE 198          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 57/186 (30.65%), Postives = 97/186 (52.15%), Query Frame = 3
Query:    6 RAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            + +S NLL+ G+ + V +R      +++A GA    +   + ++C + I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APVSG +  A  G L ++  G+KA++D+    +  +       GE+G G   KL   +I+   +   SE L LA K+G++P
Sbjct:   13 KPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNP 198          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 57/186 (30.65%), Postives = 97/186 (52.15%), Query Frame = 3
Query:    6 RAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            + +S NLL+ G+ + V +R      +++A GA    +   + ++C + I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APVSG +  A  G L ++  G+KA++D+    +  +       GE+G G   KL   +I+   +   SE L LA K+G++P
Sbjct:   13 KPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNP 198          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.702e-20
Identity = 54/183 (29.51%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   15 SMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++NL++ G  + V++ +    + L   GA +  SPAEV K+  + + ML   A   +V   + G+ + + PG   +D ST+D  T+ +++          L+ PVSG    AE G L  +  G +  ++ A + L  +GK     G+VG G   K+  N+++G  M   SE + L  K G+DP
Sbjct:   38 AINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDP 220          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.792e-20
Identity = 56/184 (30.43%), Postives = 92/184 (50.00%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++ NL+++G+ + +++     C E    G  V  SPAEV +K    I ML     A+ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   M   +E + L  +SGLDP
Sbjct:   53 MAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDP 236          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 8.447e-20
Identity = 54/184 (29.35%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     ++ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG+G   K+  NM++   M   +E + L  +SGLDP
Sbjct:   53 MAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDP 236          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 53/184 (28.80%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   M   +E + L  + GLDP
Sbjct:   54 MAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 237          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 53/184 (28.80%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   M   +E + L  + GLDP
Sbjct:   54 MAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 237          
The following BLAST results are available for this feature:
BLAST of CX288572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GLYR1_DROME4.774e-3136.67Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
GLYR1_DROPS8.144e-3138.33Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
YFJR_BACSU6.910e-2234.24Uncharacterized oxidoreductase yfjR OS=Bacillus su... [more]
GARR_ECOLI1.539e-2130.652-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL61.539e-2130.652-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
3HIDH_DICDI1.702e-2029.51Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_MOUSE3.792e-2030.433-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_RAT8.447e-2029.353-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_PONAB2.717e-1828.803-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_HUMAN2.717e-1828.803-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC02001H08SK IF1 Citrus clementina cDNA clone C02001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288572 ID=CX288572; Name=CX288572; organism=Citrus clementina; type=EST; length=564bp
GCACGAGGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACT
GTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGC
TACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTA
TTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAA
GGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGTC
AACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAA
AAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCA
GAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGA
TGAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGG
GGGAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAATG
GGCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAG
TGGACTTGACCCTC
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