CX288572

Overview
NameCX288572
Unique NameCX288572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 52/184 (28.26%), Postives = 91/184 (49.46%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++ NL+++G+ + +++     C E +  G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  N+++   M   +E + L  + GLDP
Sbjct:   54 MAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDP 237          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.549e-18
Identity = 52/186 (27.96%), Postives = 94/186 (50.54%), Query Frame = 3
Query:    6 RAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++++ ++L +G  V V+ RT  K + ++  GA    +  ++ K+  + I M+  P+    V F   G++E    G   IDM+T     + KI+ A   K    L+APVSG    A+ G L I+  GEK  ++  +   +++G+   + G  G+G   K+   + +   M   +E +  A+KSGL+P
Sbjct:   15 KSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEP 200          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.053e-18
Identity = 54/184 (29.35%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLV-ILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD 560
            ++ NL++NG K+ V++   +   E  A G  V   PA++       I +L       +V   + G+ + I PG   +D ST+D   S+++++A       +++AP+SG    A+   L  ++ AG  A +  A + L+++GK    LG VGNG   K+  NM++G  M   +E + L    GLD
Sbjct:   16 MARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLD 199          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.924e-17
Identity = 58/183 (31.69%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD 560
            ++ NL++ G K+ V++ +   CD L A GATV    +E+ K     I ML + A  +   +D+    + +     +ID ST+  +    + + I++KG  F++APVSG    AE   L  +  G +A Y+   + L  +GKK    G  G G   KL  NM++   M   SE + LA + GLD
Sbjct:   43 MASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAI-VDASYDEM-TADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLD 223          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 57/184 (30.98%), Postives = 87/184 (47.28%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++ NLL+ G +V V++        LV  GA    S  +  +   + I ML       S+     G+L ++      ID ST+  ET+ K++ A  +KG   L+APVSG    A  G L  +  G    +  A   L  +G+  F  G+ G G   K+  NM++G +M   +E L L  K+GLDP
Sbjct:   16 MAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDP 199          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 53/185 (28.65%), Postives = 94/185 (50.81%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            +++NL R G ++ V   T+    DEL++ GA    +  +V +   I   M+ D      V+F + G  +    GK  +DMS++    + + +R +   GG +L+APVSG +  A  G L I+  G++A+++       ++GK    +G  G+G   K+   +I+   +   SE L+ A K+G DP
Sbjct:   15 MAINLARAGHQLHV--TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADP 197          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: Y229_SYNY3 (Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803) GN=slr0229 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.664e-16
Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 563
            ++ NL++NG++   +NRTL +    E    G  V  S A       I +  + D      ++   GG+ E   P    ID ST+    + +++  +  +G  FL+APV+G    A  G L I+  G+ + ++EA+  L  IG+K    G  G+G  +KL   ++ G      +E + L+E+ G+ P
Sbjct:   18 MAQNLVKNGYQTVGYNRTLERPSVQEAAKAGVKVVTSIAVAAANADIILTCVGDEKDVQQLILGSGGIAEYAKPQALIIDCSTIGKTAAYELATNLKLQGLRFLDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAEAIQLSEQLGIAP 203          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.303e-14
Identity = 50/181 (27.62%), Postives = 90/181 (49.72%), Query Frame = 3
Query:   21 NLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD 560
            +L++ G  VTV+NRT +K  + V  +G     +P +  +   I    + +      VV  + G++  +  G   +D +T   + + +I+  I      FL+APVSG +  AE G L ++  G++A +D     ++   + A  LG VG G   K+V  + +  ++   +EGL  A+ +GLD
Sbjct:   19 HLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVLGEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLD 199          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.543e-13
Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 3
Query:   21 NLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL---EQICPGKGYIDMSTVDHETSIKISRAITS----------KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 557
            NL+R G+KVTV +            G +   +P EV +   + I ML   +  + V     G+L     I P   +ID ST+D +T+ KIS A+++          +    L+APVSG    AE G L  +  G +  Y  A   L  +G+ + + G  GNG+  K+  N+ M   M   SE L L +  G+
Sbjct:   55 NLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPAL-FIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGI 245          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: YIHU_SHIFL (Uncharacterized oxidoreductase yihU OS=Shigella flexneri GN=yihU PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.437e-13
Identity = 51/182 (28.02%), Postives = 85/182 (46.70%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 557
            ++ NLL+ G ++ V++        LV  GAT   +PA+  K     I ML +     +V+F + GV E +      IDMST+    + K+   + +KG   ++ PV  +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+ N +   +    +E  VL E   L
Sbjct:   16 MASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALNL 197          
The following BLAST results are available for this feature:
BLAST of CX288572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
3HIDH_BOVIN2.717e-1828.263-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
YKWC_BACSU3.549e-1827.96Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
3HIDH_CAEEL6.053e-1829.35Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_DROME3.924e-1731.69Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
MMSB_PSEAE3.322e-1630.983-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]
GLXR_ECOLI3.322e-1628.652-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
Y229_SYNY39.664e-1627.96Uncharacterized oxidoreductase slr0229 OS=Synechoc... [more]
Y1503_SHEFN5.303e-1427.62Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
3HIDH_ARATH1.543e-1330.21Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
YIHU_SHIFL3.437e-1328.02Uncharacterized oxidoreductase yihU OS=Shigella fl... [more]

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Properties
Property NameValue
Genbank descriptionC02001H08SK IF1 Citrus clementina cDNA clone C02001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288572 ID=CX288572; Name=CX288572; organism=Citrus clementina; type=EST; length=564bp
GCACGAGGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACT
GTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGC
TACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTA
TTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAA
GGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGTC
AACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAA
AAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCA
GAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGA
TGAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGG
GGGAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAATG
GGCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAG
TGGACTTGACCCTC
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