CX288572

Overview
NameCX288572
Unique NameCX288572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14318 contig Ccv1_Contig14318:281..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: YIHU_ECOLI (Uncharacterized oxidoreductase yihU OS=Escherichia coli (strain K12) GN=yihU PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.437e-13
Identity = 51/182 (28.02%), Postives = 85/182 (46.70%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 557
            ++ NLL+ G ++ V++        LV  GAT   +PA+  K     I ML +     +V+F + GV E +      IDMST+    + K+   + +KG   ++ PV  +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+ N +   +    +E  VL E   L
Sbjct:   16 MASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALNL 197          
BLAST of CX288572 vs. ExPASy Swiss-Prot
Match: YIHU_SALTY (Uncharacterized oxidoreductase yihU OS=Salmonella typhimurium GN=yihU PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 51/182 (28.02%), Postives = 84/182 (46.15%), Query Frame = 3
Query:   12 ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 557
            ++ NLL+ G +++V++        LV  GA    SPA+        I ML +     SV+F + GV E +      IDMST+    +  +   + SKG   ++ P+  +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+ N +   +    +E  VL E  GL
Sbjct:   16 MASNLLKQGHQLSVFDVNPDAVQRLVDKGAQPASSPAQATIGAEFVITMLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQTDNLIADMQSKGFSMMDVPIGRTSDNAITGTLLLLAGGTAEQVERATPVLMAMGNELVNTGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGL 197          
The following BLAST results are available for this feature:
BLAST of CX288572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
YIHU_ECOLI3.437e-1328.02Uncharacterized oxidoreductase yihU OS=Escherichia... [more]
YIHU_SALTY1.000e-1228.02Uncharacterized oxidoreductase yihU OS=Salmonella ... [more]

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Properties
Property NameValue
Genbank descriptionC02001H08SK IF1 Citrus clementina cDNA clone C02001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288572 ID=CX288572; Name=CX288572; organism=Citrus clementina; type=EST; length=564bp
GCACGAGGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACT
GTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGC
TACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTA
TTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAA
GGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGTC
AACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAA
AAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCA
GAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGA
TGAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGG
GGGAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAATG
GGCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAG
TGGACTTGACCCTC
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