CX288582

Overview
NameCX288582
Unique NameCX288582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.140e-45
Identity = 94/164 (57.32%), Postives = 108/164 (65.85%), Query Frame = 3
Query:   69 GNCGSGVVCPGGECCSRFGWCGLTIDHCC-DGCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPC 545
            G    G +CPGG CCS+FGWCG T D+C   GCQS        +C       G GG L  +ISRE F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC
Sbjct:    4 GRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQS--------QCSGSGPAPGPGG-LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPC 156          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.489e-45
Identity = 88/167 (52.69%), Postives = 104/167 (62.28%), Query Frame = 3
Query:   57 GGSAGN-CG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPC 545
            GGS G  CG    G +CPGG CCS+FGWCG T D+C   CQS C        D           L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC
Sbjct:   22 GGSYGEQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGKDCQSQCGGPSPAPTD-----------LSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPC 177          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.945e-45
Identity = 91/169 (53.85%), Postives = 110/169 (65.09%), Query Frame = 3
Query:   66 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCG----ECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 545
            A  CGS   G  CP   CCSRFGWCG T D+C DGCQS C    CG       P    +G GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC
Sbjct:   19 AEQCGSQAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQC--AGCGGGGTPVTPTPTPSGGGG-VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPC 183          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.540e-45
Identity = 83/164 (50.61%), Postives = 103/164 (62.80%), Query Frame = 3
Query:   63 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPC 545
            SA  CG+   G +CPGG CCS+FGWCG T ++C DGCQS C+             +  GG L  +IS + F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCSG------------SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPC 170          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.540e-45
Identity = 83/166 (50.00%), Postives = 104/166 (62.65%), Query Frame = 3
Query:   57 GGSAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYC--DPNYPC 545
            G   G+   G +CP   CCS++GWCG T  +C  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC
Sbjct:   20 GEQCGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPC 184          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.317e-45
Identity = 89/162 (54.94%), Postives = 105/162 (64.81%), Query Frame = 3
Query:   69 GNCGSGVVCPGGECCSRFGWCGLTIDHCCD-GCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 545
            G    G +CP G CCS FGWCG T  +C   GCQS C     G   P     G  G+L  IISR  F+D+L++RND  CPAR FYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYCF +E    SS+YC P+  +PC
Sbjct:   24 GRQAGGALCPNGLCCSEFGWCGDTEAYCKQPGCQSQC-----GGTPP-----GPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQN-PSSNYCSPSAEWPC 174          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 89/170 (52.35%), Postives = 108/170 (63.53%), Query Frame = 3
Query:   66 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGGELG-----KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 545
            A  CGS   G +CP   CCS +GWCG T D+C DGCQS C+   CG         G GG  G      ++S+E+FE LL +RND  CPAR FYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+GA +S YC P+  +PC
Sbjct:   23 AEQCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDG--CGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPC 189          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.658e-45
Identity = 89/166 (53.61%), Postives = 107/166 (64.46%), Query Frame = 3
Query:   66 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 545
            A NCGS   G  C  G+CCS+FGWCG T D+C  G CQS        +C       G GG+LG  IS  MF+ +L++RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC
Sbjct:   26 AQNCGSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQS--------QCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPC 182          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.170e-44
Identity = 84/168 (50.00%), Postives = 106/168 (63.10%), Query Frame = 3
Query:   57 GGSAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGG-ELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP-NYPC 545
            G  A  CGS   G VCP G CCS+FG+CG T  +C DGCQS C         P   T   GG ++G+++   +F+ +L+YRND RC    FYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYCF  E       YC P ++PC
Sbjct:   20 GSKAEQCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKS----SPTPTIPTPSTGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQN-TQEVYCSPKDWPC 182          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.067e-43
Identity = 90/168 (53.57%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   63 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 545
            SA  CGS   G +C  G CCS+FGWCG T D+C  G CQS C               G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC
Sbjct:   17 SAEQCGSQAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPC 172          
The following BLAST results are available for this feature:
BLAST of CX288582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_GOSHI1.140e-4557.32Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI5_PHAVU1.489e-4552.69Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIA_SECCE1.945e-4553.85Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_PEA2.540e-4550.61Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_ORYSJ2.540e-4550.00Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA3.317e-4554.94Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI9_ORYSJ4.332e-4552.35Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU5.658e-4553.61Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIX_PEA8.170e-4450.00Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_SOLTU1.067e-4353.57Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC02002A07SK IF1 Citrus clementina cDNA clone C02002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288582 ID=CX288582; Name=CX288582; organism=Citrus clementina; type=EST; length=557bp
AAATGAGGCTTATTGCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTT
GTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGG
AGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAATAGACCACT
GTTGTGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGT
GATCCCGACNACNGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCAT
CTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGAT
GCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAA
GCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGA
AATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGC
CCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAA
GTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGG
GAAGTAC
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