CX288582

Overview
NameCX288582
Unique NameCX288582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  240 GKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDY 524
            G I++RE+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +   Y
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSDRYY 118          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.569e-23
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   60 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-CDPDXXTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 356
            GSA  CG      +CPGG CCS +GWCG T+D+C DGCQS C+    G+ CD      GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.038e-22
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 3
Query:  237 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE 500
            +G I++ ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYCF R+
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ 112          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 3
Query:  237 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE 500
            +G I++ ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYCF R+
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ 112          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 3
Query:  237 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG 551
            +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYCF  E+  A+S    P Y  RG
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATS----PPYYGRG 132          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 9.719e-21
Identity = 58/165 (35.15%), Postives = 85/165 (51.52%), Query Frame = 3
Query:   75 CGSGV---VCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDXXTAGDG--GELGKIISRE-MFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPC 545
            CG+ V    C    CCS  GWCG   D+C    CQ  C+  V G   P    +G+     +G ++  E +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C         +D+C   ++PC
Sbjct:   72 CGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRG---PRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPC 230          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.300e-20
Identity = 58/164 (35.37%), Postives = 83/164 (50.61%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD---PNYPC 545
            +A +CG    C   +CCS++G+CG   D+C  GCQ+       G CD     A +   +  I++ E F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +C+  E+   S +YCD     +PC
Sbjct:   24 AAQSCG----CASDQCCSKWGFCGTGSDYCGTGCQA-------GPCD---VPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPC 159          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.403e-19
Identity = 55/164 (33.54%), Postives = 79/164 (48.17%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPC 545
            +A NCG    C    CCS+FG+CG T ++C DGCQS      C        + G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC
Sbjct:   19 AAQNCG----CQPNVCCSKFGYCGTTDEYCGDGCQSG----PCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPC 159          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 53/109 (48.62%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  237 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYC---FNREVGAASSDYCDPNYPCRGK 554
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y  G     F R     S +Y   NY   GK
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELGSTSDYFGRGPIQISYNY---NYGAAGK 98          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 59/163 (36.20%), Postives = 76/163 (46.63%), Query Frame = 3
Query:   72 NCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGD--GGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPC 545
            NCG    C    CCS+FG+CG T  +C  GC+S       G C     T     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+  E+  AS DYCD N   YPC
Sbjct:   26 NCG----CAPNLCCSQFGYCGSTDAYCGTGCRS-------GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPC 159          
The following BLAST results are available for this feature:
BLAST of CX288582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC1.602e-2351.58Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIC_POPTR3.569e-2353.33Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIP_TOBAC1.038e-2255.68Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC3.021e-2254.55Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ6.731e-2249.06Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI9.719e-2135.15Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ6.300e-2035.37Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE1.403e-1933.54Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIT_AVESA6.965e-1948.62Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI4_BRANA9.097e-1936.20Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02002A07SK IF1 Citrus clementina cDNA clone C02002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288582 ID=CX288582; Name=CX288582; organism=Citrus clementina; type=EST; length=557bp
AAATGAGGCTTATTGCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTT
GTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGG
AGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAATAGACCACT
GTTGTGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGT
GATCCCGACNACNGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCAT
CTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGAT
GCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAA
GCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGA
AATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGC
CCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAA
GTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGG
GAAGTAC
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