CX288582

Overview
NameCX288582
Unique NameCX288582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 57/165 (34.55%), Postives = 77/165 (46.67%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-CNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPC 545
            +A NCG    C    CCS+FG+CG T  +C DGCQS  C     G         G GG     +  + F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPC 170          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 57/165 (34.55%), Postives = 77/165 (46.67%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPC 545
            SA NCG    C  G CCS++G+CG   D+C  GCQ    Q  C    P      +      I++ +    +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPC 160          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 57/169 (33.73%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-CNQVVCGECDPDXXTAGDGGELG---KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR 548
            SA NCG    C    CCS++G+CG   D+C DGC+S  C     G         G GG  G   + +  E F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQ 179          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 54/169 (31.95%), Postives = 78/169 (46.15%), Query Frame = 3
Query:   63 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXT----AGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR 548
            +A NCG    C  G CCS++G+CG T  +C  GCQS       GE           AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQ 176          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 52/149 (34.90%), Postives = 70/149 (46.98%), Query Frame = 3
Query:  108 CCSRFGWCGLTIDHCCDGCQSNCNQVVCGEC-DPDXXTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 545
            CCS+ G+CG + D+C  GCQ+       G C DP     GDG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDP---CEGDGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPC 136          
BLAST of CX288582 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 59/175 (33.71%), Postives = 72/175 (41.14%), Query Frame = 3
Query:   66 AGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDXXTA----------GDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN----YPC 545
            A NCG    C    CCS FG+CG    +C  G   NC    C    P   T           G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPC 178          
The following BLAST results are available for this feature:
BLAST of CX288582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE1.006e-1734.55Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.006e-1734.55Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI5_ORYSJ4.991e-1733.73Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.112e-1631.95Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA1.606e-1534.90Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIP_BETVU3.028e-1433.71Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]

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Properties
Property NameValue
Genbank descriptionC02002A07SK IF1 Citrus clementina cDNA clone C02002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288582 ID=CX288582; Name=CX288582; organism=Citrus clementina; type=EST; length=557bp
AAATGAGGCTTATTGCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTT
GTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGG
AGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAATAGACCACT
GTTGTGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGT
GATCCCGACNACNGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCAT
CTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGAT
GCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAA
GCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGA
AATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGC
CCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAA
GTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGG
GAAGTAC
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