CX288585

Overview
NameCX288585
Unique NameCX288585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.967e-52
Identity = 98/107 (91.59%), Postives = 105/107 (98.13%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKG+EIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKT EA+DILKLMSSTYL+ALCQAIDLRHLEENL+
Sbjct:  424 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGSEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTVEALDILKLMSSTYLVALCQAIDLRHLEENLR 530          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.967e-52
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNL+GGRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGL S+RKTAEAVDILKLMSST+L+ALCQAIDLRHLEENLK+
Sbjct:  431 FSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLNSSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKN 538          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.967e-52
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVND+Y+NGLPSNL+ GRNP LDYGFKG EIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVD+LKLMSSTYL+ALCQAIDLRHLEENLK+
Sbjct:  419 FSELVNDYYNNGLPSNLTAGRNPSLDYGFKGVEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDVLKLMSSTYLVALCQAIDLRHLEENLKN 526          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.181e-52
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVND+Y+NGLPSNL+ GRNP LDYGFKG+EIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYL+ALCQAIDLRHLEENL++
Sbjct:  423 FSELVNDYYNNGLPSNLTAGRNPSLDYGFKGSEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRN 530          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.181e-52
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKT+EAV+ILKLMS+T+L+ LCQAIDLRHLEENLKS
Sbjct:  429 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKS 536          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_PETCR (Phenylalanine ammonia-lyase 2 OS=Petroselinum crispum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.181e-52
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKT+EAV+ILKLMS+T+L+ LCQAIDLRHLEENLKS
Sbjct:  427 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKS 534          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.181e-52
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVND+Y+NGLPSNL+  RNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYL+ALCQAIDLRHLEENLK+
Sbjct:  426 FSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKN 533          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.181e-52
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKT+EAV+ILKLMS+T+L+ LCQAIDLRHLEENLKS
Sbjct:  427 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKS 534          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 8.837e-52
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPS+LSGGRNP LD GFKG EIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYL+ALCQ+IDLRHLEEN+KS
Sbjct:  422 FSELVNDFYNNGLPSHLSGGRNPSLDSGFKGGEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQSIDLRHLEENMKS 529          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.837e-52
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLSGGRNP LDYGFKGAEIAMA+YCSELQFL NPVTNHVQSAEQHNQDVNSLGLIS+RKT EA+DILKLMSST+LIALCQA+DLRH+EEN+KS
Sbjct:  424 FSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQDVNSLGLISSRKTDEAIDILKLMSSTFLIALCQAVDLRHIEENVKS 531          
The following BLAST results are available for this feature:
BLAST of CX288585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PALY_DIGLA3.967e-5291.59Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PALY_CITLI3.967e-5291.67Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL2_IPOBA3.967e-5290.74Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL3_TOBAC5.181e-5290.74Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL3_PETCR5.181e-5290.74Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PAL2_PETCR5.181e-5290.74Phenylalanine ammonia-lyase 2 OS=Petroselinum cris... [more]
PAL1_TOBAC5.181e-5291.67Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_PETCR5.181e-5290.74Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PALY_HELAN8.837e-5291.67Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL2_ORYSJ8.837e-5289.81Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC02002A11SK IF1 Citrus clementina cDNA clone C02002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288585 ID=CX288585; Name=CX288585; organism=Citrus clementina; type=EST; length=327bp
ATTTTCTGAGCTGGTTAATGATTTTTACAGTAATGGGTTGCCTTCAAATC
TGTCTGGTGGTAGGAATCCATGCTTGGATTATGGGTTCAAAGGTGCCGAA
ATAGCAATGGCTGCGTATTGTTCCGAGCTCCAGTTTCTAGCCAATCCTGT
GACTAATCACGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTT
TAGGGCTGATCTCTGCCAGAAAAACAGCTGAAGCTGTTGATATCTTGAAG
CTCATGTCCTCAACTTACTTGATTGCACTCTGCCAAGCTATAGACTTGAG
GCACTTGGAGGAGAATCTGAAGAGCAC
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