CX288585

Overview
NameCX288585
Unique NameCX288585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.080e-49
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            FSELVND+Y+NGLPS L+G  NP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKT+EAVDILKLMSST+L+ALCQAIDLRHLEENLK
Sbjct:  421 FSELVNDYYNNGLPSILTGSSNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLMSSTFLVALCQAIDLRHLEENLK 527          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.411e-49
Identity = 95/108 (87.96%), Postives = 103/108 (95.37%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLS  RNP LDYGFKGAEIAMA+YCSELQ+LANPVT HVQSAEQHNQDVNSLGLISARKT EA++IL+LMSST+LIALCQAIDLRHLEENLK+
Sbjct:  436 FSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKTNEAIEILQLMSSTFLIALCQAIDLRHLEENLKN 543          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 1.843e-49
Identity = 91/108 (84.26%), Postives = 103/108 (95.37%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVN+FY+NGL SNL+G RNP LDYGFKG EIAMA+YCSELQ+LANP+TNHVQSAEQHNQDVNSLGL+SARKT EAVDILKLM+STY++ALCQA+DLRHLEEN+KS
Sbjct:  414 FSELVNEFYNNGLTSNLAGSRNPSLDYGFKGTEIAMASYCSELQYLANPITNHVQSAEQHNQDVNSLGLVSARKTLEAVDILKLMTSTYIVALCQAVDLRHLEENIKS 521          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.407e-49
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNL+  RNP LDYGFKGAEIAMA+YCSELQ+LANPVT HVQSAEQHNQDVNSLGLIS+RKT EA++ILKLMSST+LIALCQAIDLRHLEENLK+
Sbjct:  424 FSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKN 531          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 4.105e-49
Identity = 91/107 (85.05%), Postives = 104/107 (97.20%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            FSELVNDFY+NGLPSNL+  RNP LDYGFKGAEIAMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+RKT+EAVDILKLMS+T+L+A+CQA+DLRHLEENL+
Sbjct:  436 FSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLMSTTFLVAICQAVDLRHLEENLR 542          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.361e-49
Identity = 93/108 (86.11%), Postives = 103/108 (95.37%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLS  RNP LDYGFKG+EIAMA+YCSELQ+LANPVT HVQSAEQHNQDVNSLGLIS+RKT EA++IL+LMSST+LIALCQAIDLRHLEENLK+
Sbjct:  436 FSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTKEAIEILQLMSSTFLIALCQAIDLRHLEENLKN 543          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.002e-49
Identity = 93/108 (86.11%), Postives = 103/108 (95.37%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLS  RNP LDYGFKG+EIAMA+YCSELQ+LANPVT HVQSAEQHNQDVNSLGLIS+RKT EA++IL+LMSST+LIALCQAIDLRHLEENLK+
Sbjct:  435 FSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLKN 542          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.002e-49
Identity = 90/107 (84.11%), Postives = 105/107 (98.13%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            FSELVND+Y+NGLPSNL+G R+P LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKT+EAV+ILKLMSS++L+ALCQA+DLRH+EEN++
Sbjct:  416 FSELVNDYYNNGLPSNLTGSRDPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSSSFLVALCQAVDLRHIEENVR 522          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.145e-49
Identity = 92/108 (85.19%), Postives = 103/108 (95.37%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNLS  RNP LDYGFKG+EIAMA+YCSELQ+LANPVT HVQSAEQHNQDVNSLGLIS+RKT EA++IL+LMSST+LIALCQA+DLRHLEENLK+
Sbjct:  434 FSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAVDLRHLEENLKN 541          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.037e-48
Identity = 91/108 (84.26%), Postives = 104/108 (96.30%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FS+LVND+Y+NGLPSNL+  RNP LDYGFKGAEIAMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+RKT EA++ILKLMSST+L+ALCQAIDLRHLEENLK+
Sbjct:  423 FSDLVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEALEILKLMSSTFLVALCQAIDLRHLEENLKN 530          
The following BLAST results are available for this feature:
BLAST of CX288585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PAL1_RUBID1.080e-4988.79Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PALY_MEDSA1.411e-4987.96Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PAL1_ORYSJ1.843e-4984.26Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL1_SOYBN2.407e-4987.04Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PAL1_ARATH4.105e-4985.05Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_TRISU5.361e-4986.11Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PAL2_PEA7.002e-4986.11Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PAL2_LITER7.002e-4984.11Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL1_PEA9.145e-4985.19Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL2_PHAVU2.037e-4884.26Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]

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Properties
Property NameValue
Genbank descriptionC02002A11SK IF1 Citrus clementina cDNA clone C02002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288585 ID=CX288585; Name=CX288585; organism=Citrus clementina; type=EST; length=327bp
ATTTTCTGAGCTGGTTAATGATTTTTACAGTAATGGGTTGCCTTCAAATC
TGTCTGGTGGTAGGAATCCATGCTTGGATTATGGGTTCAAAGGTGCCGAA
ATAGCAATGGCTGCGTATTGTTCCGAGCTCCAGTTTCTAGCCAATCCTGT
GACTAATCACGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTT
TAGGGCTGATCTCTGCCAGAAAAACAGCTGAAGCTGTTGATATCTTGAAG
CTCATGTCCTCAACTTACTTGATTGCACTCTGCCAAGCTATAGACTTGAG
GCACTTGGAGGAGAATCTGAAGAGCAC
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