CX288585

Overview
NameCX288585
Unique NameCX288585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 3.475e-48
Identity = 92/108 (85.19%), Postives = 102/108 (94.44%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVNDFY+NGLPSNL+  RNP LDYGFKGAEIAMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSL LISARKT E+++ILKLMSST+L+ LCQAIDLRHLEENLKS
Sbjct:  217 FSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLDLISARKTNESIEILKLMSSTFLMGLCQAIDLRHLEENLKS 324          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.475e-48
Identity = 90/107 (84.11%), Postives = 104/107 (97.20%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            FSELVND+Y+NGLPSNL+G RNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RKT+EAV+ILKLMSS++L+AL QA+DLRH+EEN++
Sbjct:  421 FSELVNDYYNNGLPSNLTGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSSSFLVALFQAVDLRHIEENVR 527          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 5.928e-48
Identity = 92/107 (85.98%), Postives = 100/107 (93.46%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            F+ELVNDFY+NGLPSNLSGGRNP LDYG KGAE+AMA+YCSELQFLANPVTNHV+SA QHNQDVNSLGLIS+R TAEAV ILKLMS+TYL+ALCQA DLRHLEE LK
Sbjct:  415 FTELVNDFYNNGLPSNLSGGRNPSLDYGLKGAEVAMASYCSELQFLANPVTNHVESASQHNQDVNSLGLISSRTTAEAVVILKLMSTTYLVALCQAFDLRHLEEILK 521          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 5.928e-48
Identity = 89/107 (83.18%), Postives = 102/107 (95.33%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            FSELVNDFY+NGLPSNL+   NP LDYGFKGAEIAMA+YCSELQ+LANPVT+HVQSAEQHNQDVNSLGLIS+RKT+EAVDILKLMS+T+L+ +CQA+DLRHLEENL+
Sbjct:  428 FSELVNDFYNNGLPSNLTASSNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLMSTTFLVGICQAVDLRHLEENLR 534          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.842e-47
Identity = 88/108 (81.48%), Postives = 100/108 (92.59%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            FSELVND Y+NGLPSNL+GGRNP LDYGFKGAEIAMA+YCSELQFL    TNHVQSAEQHNQDVNSLGLIS+RKTAEA+DILKLMS+T+L+ LC ++DLRH+EENLK+
Sbjct:  422 FSELVNDLYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLDQSCTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVGLCHSVDLRHIEENLKN 529          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.548e-46
Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKS 325
            F+EL ND Y+NGLPSNLS GRNP LDYGFK +E+AMAAYCSELQ+LANPVT+HVQS EQHNQDVNSLGLISA KT EA++ILKLMSSTYL+ALCQAIDLRHLEE  K+
Sbjct:  422 FTELANDLYNNGLPSNLSVGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSTEQHNQDVNSLGLISALKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKN 529          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.464e-46
Identity = 88/106 (83.02%), Postives = 98/106 (92.45%), Query Frame = 2
Query:    2 FSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENL 319
            FSELVND+Y+ GLPSNLSGG NP LDYG KGAEIAMA+Y SEL +LANPVT+HVQSAEQHNQDVNSLGL+SARK+AEA+DILKLM STYL ALCQA+DLRHLEEN+
Sbjct:  430 FSELVNDYYNGGLPSNLSGGPNPSLDYGLKGAEIAMASYTSELLYLANPVTSHVQSAEQHNQDVNSLGLVSARKSAEAIDILKLMLSTYLTALCQAVDLRHLEENM 535          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_AGABI (Phenylalanine ammonia-lyase (Fragment) OS=Agaricus bisporus GN=palA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.330e-23
Identity = 52/102 (50.98%), Postives = 75/102 (73.53%), Query Frame = 2
Query:    5 SELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLE 310
            +EL+N   + GLP +L+   +P L+Y  KG +IA AAY +EL +LA+PV+ H+QSAE HNQ VNS+ L+SAR T  ++D+L ++ +TYL  LCQA+DLR L+
Sbjct:   39 TELINPATNRGLPPSLAAS-DPSLNYHVKGVDIATAAYAAELGYLASPVSTHIQSAEMHNQAVNSMALVSARATINSIDVLSMLVATYLYNLCQALDLRALQ 139          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    5 SELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLK 322
            +E++N   + GLPS L+   +P L Y  KG +IA AAY SEL  LANPVT HVQ AE  NQ VNSL LISAR+T E+ D+L L+ +T+L  + QAIDLR +E   K
Sbjct:  441 TEMLNAGMNRGLPSCLAA-EDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFK 545          
BLAST of CX288585 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 2
Query:    5 SELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLE 310
            +E++N   +  LPS L+   +P L Y  KG +IA AAY SEL  LANPV+ HVQ AE  NQ +NSL LISAR+TAEA D+L L+ +T+L  + QA+DLR +E
Sbjct:  443 TEMLNAGMNRALPSCLAA-EDPSLSYHCKGLDIAAAAYTSELGHLANPVSTHVQPAEMGNQAINSLALISARRTAEANDVLSLLLATHLYCVLQAVDLRAME 543          
The following BLAST results are available for this feature:
BLAST of CX288585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PAL1_PHAVU3.475e-4885.19Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PAL1_LITER3.475e-4884.11Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PAL3_ARATH5.928e-4885.98Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL2_ARATH5.928e-4883.18Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL2_POPKI3.842e-4781.48Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL3_PHAVU5.548e-4681.48Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PALY_PINTA9.464e-4683.02Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_AGABI1.330e-2350.98Phenylalanine ammonia-lyase (Fragment) OS=Agaricus... [more]
PALY_RHOTO1.245e-2153.77Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_RHORB8.067e-2152.94Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]

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Properties
Property NameValue
Genbank descriptionC02002A11SK IF1 Citrus clementina cDNA clone C02002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288585 ID=CX288585; Name=CX288585; organism=Citrus clementina; type=EST; length=327bp
ATTTTCTGAGCTGGTTAATGATTTTTACAGTAATGGGTTGCCTTCAAATC
TGTCTGGTGGTAGGAATCCATGCTTGGATTATGGGTTCAAAGGTGCCGAA
ATAGCAATGGCTGCGTATTGTTCCGAGCTCCAGTTTCTAGCCAATCCTGT
GACTAATCACGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTT
TAGGGCTGATCTCTGCCAGAAAAACAGCTGAAGCTGTTGATATCTTGAAG
CTCATGTCCTCAACTTACTTGATTGCACTCTGCCAAGCTATAGACTTGAG
GCACTTGGAGGAGAATCTGAAGAGCAC
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